Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02373 ATGGATGAAAACACAGGCATGCCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCAGCGGTGTTGGCGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTTGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTAGGAAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGTTTTGTGACGGGCGAGGCATCGGATAAGTGCCATAAAGAGAAGAGAAAGACTGTCAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAAGGGGAGAGAGCTCAACAAAATAAGGGATGTTGCAATAATAATAATAGTAACAATAATAATCATGATGCATGA 474 42.41 MDENTGMPERLVEFKYDFSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNSNNNNHDA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30411328 30411801 + Lsi02G023730.1 Lsi02g02373 657115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02373 157 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lsi02g02373 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 30 154 - -
Lsi02g02373 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Lsi02g02373 157 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lsi02g02373 157 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Lsi02g02373 157 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lsi02g02373 157 Gene3D Histone, subunit A 39 157 IPR009072 GO:0046982
Lsi02g02373 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 30 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lsi02g02373 157 SUPERFAMILY Histone-fold 44 153 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02373 Lsi-Chr2:30411328 Lsi05g00494 Lsi-Chr5:6245182 4.22E-52 dispersed
Lsi02g02373 Lsi-Chr2:30411328 Lsi10g00042 Lsi-Chr10:648177 2.99E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24900 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02373 K08065 - csv:101204763 276.174