Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02374 AATAACTCCATTTTCTTCTCTCTCAAATTCAATTCTCTCTTTTTCCGAGATATTAAACCATGGAAGTCGATCGGACGGCCGACAACGATCAGTTTCCCGATTTCCAAGAGAGCTCCGATGACTCAACCTCCAACTTGCCGGAAAGGAAGCTCCGACGAAACGATTCATTGGACGTCGAATCCCGCACCGTCCCCGGCGCCGGCGCCCATGGCCACAAGTACATGTATTAATTTGGGTTTGGTGTCCGGCAAGGCGGCGGCGACGGCGAGCTGGGGAGTGATTTTGCATCTGGCGTTTCAGAGCGTGGGAGTTGTGTACGGCGATATCGGAACGTCGCCGTTGTATGTGTATGCAAGCACATTCACCGACGGAATCAAGCATAAGGACGACGTTTTGGGGGTCTTGTCTTTGATTCTCTATACCCTCACTTTGATCCCTTTGCTTAAGTATGTCTTCTTCGTCTTACAAGCCAATGACAACGGTGAAGTAATAAATTTGTGTATATGGATGAATAATAATAATGAAGGTGGGACATTTGCTTTATACTCATTATTATGCCGATACGCAAAAATCGGGCTAATACCAAGCGAGCAAATGGAAGATCAAGAGGTATCCAATTTTCAGTTGGAGCTTCCCACCGGCCGCCTTAAAATGGCGTCTTGCCTTAAATCCAAACTTGAAAACAGCAGCGCCGCCAAGATTTTCTTGCTCTTCGCCACCATGCTCGGCACTTCCATGGTCATCGGCGACGGCGTTCTCACTCCTTCCATCTCTGTTTTGTCGGCCGTCGGAGGAGTCAAGAATGCAACCTCGACCATGACACAAGATAAAATAGTTTGGATATCAGCAGCAATCTTGGTTTGCCTATTTATGGTACAAAGATTTGGAACCCATAAAGTTGGATATTCCTTTGCTCCCATTATTTGCATTTGGTTTGCACTTATTGGTGGCATTGGCATCTATAACTTTTTGAAATTTGACCCTGCTGTCATCAAAGCTATTAATCCAAAGTACATTTTTGACTACTTCCAAAGAAACAAAAAGGATGCTTGGATCTCTCTCGGCGGTGTCATTCTTGCCATTACAGGGACTGAAGCTCTCTTTGCGGACGTGGGGCACTTCACTGTGATGTCCATAAGACTAAGTATGTGTTGCGTGGCCTACCCTGCCCTCGTCTCCGCCTATGTCGGCCAAGCCTCCTTCCTTCGTAAGCACAGCGATCTCGTCTCCGACACCTTCTTTAGCTCCATTCCAGGTACCCCAAAGCTTAAGTCAATAAGTCCTCTCTACTGGCCGACGTTTGTGGTGGCCGTGCTCGCGTCCATCGTTGCTAGTCAAGCCATGATCTCTGGCACCTTCTCCATCATCCAACAGTCCCTCTCCTATGGCTGTTTCCCTAGAGTTAAAGTTGTTCATACTTCTTCCAAGTATGAGGGCCAAGTTTACATCCCTGAAGTTAACTACCTTCTTATGTTGGCTTGTCTTGGAGTCACTCTAGGGTTTAAAGATACAACGCGAATCGGGAACGCTTATGGCATTGCAGTGGTGTTTGTAATGGCACTCACTTCAAGTTTCCTAGTGCTCATCATGATCATGATATGGAAATCTCACATACTTATCATAATTTCCTATGTTCTCACCATTGGCTTATTAGAACTTTTCTATCTAAGTTCAGTCCTTTACAAGTTTGATCAAGGTGGCTATCTTCCTTTAGCTTTTGCTGGATTTTTAATGACAATAATGTACATTTGGAATGATGTTCATAGAAGAAAATACTATTATGAACTTGAACACAAGATTTCTCCTCAAAAGCTCAAGGACATTGCTTCTCTCACAACTCTCAATCGTGTCCCTGGCCTTGCCTTGTTCTACTCCGAGCTTGTCCAAGGAATTCCTCCAATCTTCAAGCATTATCTAGCCAACATTCCCACTCTCCAAAGGGTCCTCGTTTTCGTCTCGTTCAAATCTCTCCCGATAAGTAAAGTCCCAATGGAAGAACGGTTCCTGTTTCGACGGGTCGAACCTGATGACCTTAACGTGTTCCGATGCGTGGTGAGATACGGTTACAGAGATATTATCCACGAGCAAGAGTCGTTCGAGAGAGTGCTTGTGGAGAGGTTGAAAATGTTTATAGAGGAGGAGTCGTGGAAGTTGCAAAACGATGAAAACGATCGAGTTGACGAGAGAAGGAGGAAGATAGGAGAGGAGATAGAGGTGGTGGATAGAGCTTGGAGAGATGGAATTGTTCACTTGATTGGACAAAATGAGGTTGTGGCAAGTAAAGGGTCAGGGTTAGCAAAAAGGGTTTTGATCAATTATGCTTATAATGCATTGAGAAGAAATTTGAGACAAAGTGAAGAGGTCTTTTACATCCCTAGAAAACGTTTGCTCAAAGTGGGTATGACTTATGAGCTTTAG 2418 44.83 NNSIFFSLKFNSLFFRDIKPWKSIGRPTTISFPISKRAPMTQPPTCRKGSSDETIHWTSNPAPSPAPAPMATSTCINLGLVSGKAAATASWGVILHLAFQSVGVVYGDIGTSPLYVYASTFTDGIKHKDDVLGVLSLILYTLTLIPLLKYVFFVLQANDNGEVINLCIWMNNNNEGGTFALYSLLCRYAKIGLIPSEQMEDQEVSNFQLELPTGRLKMASCLKSKLENSSAAKIFLLFATMLGTSMVIGDGVLTPSISVLSAVGGVKNATSTMTQDKIVWISAAILVCLFMVQRFGTHKVGYSFAPIICIWFALIGGIGIYNFLKFDPAVIKAINPKYIFDYFQRNKKDAWISLGGVILAITGTEALFADVGHFTVMSIRLSMCCVAYPALVSAYVGQASFLRKHSDLVSDTFFSSIPGTPKLKSISPLYWPTFVVAVLASIVASQAMISGTFSIIQQSLSYGCFPRVKVVHTSSKYEGQVYIPEVNYLLMLACLGVTLGFKDTTRIGNAYGIAVVFVMALTSSFLVLIMIMIWKSHILIIISYVLTIGLLELFYLSSVLYKFDQGGYLPLAFAGFLMTIMYIWNDVHRRKYYYELEHKISPQKLKDIASLTTLNRVPGLALFYSELVQGIPPIFKHYLANIPTLQRVLVFVSFKSLPISKVPMEERFLFRRVEPDDLNVFRCVVRYGYRDIIHEQESFERVLVERLKMFIEEESWKLQNDENDRVDERRRKIGEEIEVVDRAWRDGIVHLIGQNEVVASKGSGLAKRVLINYAYNALRRNLRQSEEVFYIPRKRLLKVGMTYEL 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30419480 30425930 - Lsi02G023740.1 Lsi02g02374 657116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02374 805 PANTHER POTASSIUM TRANSPORTER 86 804 - -
Lsi02g02374 805 Pfam K+ potassium transporter 98 691 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g02374 805 MobiDBLite consensus disorder prediction 35 54 - -
Lsi02g02374 805 TIGRFAM kup: potassium uptake protein 97 804 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi02g02374 805 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 86 804 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02374 Lsi-Chr2:30419480 Lsi11g00079 Lsi-Chr11:846089 0 dispersed
Lsi03g01052 Lsi-Chr3:20254552 Lsi02g02374 Lsi-Chr2:30419480 6.13E-68 dispersed
Lsi02g02374 Lsi-Chr2:30419480 Lsi02g02375 Lsi-Chr2:30442129 0 tandem
Lsi07g00402 Lsi-Chr7:4328196 Lsi02g02374 Lsi-Chr2:30419480 0 transposed
Lsi02g02374 Lsi-Chr2:30419480 Lsi03g01051 Lsi-Chr3:20250539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02374 K03549 - csv:101213493 1292.72