Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02376 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACGACGAGGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTTCAGCTAGGGCAAGTTTCACTCGCTCCTCTTCACCTCCACCGCTCCTCTTCCGCGGCCGCCGCTTCCTCCGCCGTTTGCTTCCAGGACTTGCCTGAATCTGAAGCACCGCCGATGGTCAACGCTTCCGACGCTCTCCCCTCCTCCTCTCCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAGGACTTCTTCTGTACCCCTGACTATATCACCCCGGACAATCAAAATTTGTTGAATGGTGTGGATAGCAACAAGGAATGCATTCCTTGCCCCAAATCTCCAGAGAAGATTAATACTGTTAAAACTAAGAGAAAAATACATGAAAGTGTTTTAGTACATCCTCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAGCTTGGAAATGACATGTTTGGATCAGATGATGTGGATATGGAGAAAGAGACAATGGCCATGCCAAAGAAAGAAAACTATGTTTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACTTGAAAGATGCTTCAGATGTAGGCGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGATTTTTTCCTGCGCTGTTTAGCGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAGGTATTGAAGAGAATTGATGGTTGCTTATATGCTGTCAAACAAAGCACAAGACCGTTGAATCAAGACGTAGAAAGGAGGAGAGCGTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATTGTTGGATACTACTCTTCATGGTTTGAAAATGAACAACTCTATATTCAAATGGAGCTCTGTGATTTTAGTTTATCAATTGGCAGGTATTCCCACCCATTCTCTGAGGTAGATGCGCTGAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAGTAGCTCATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACCCTTCTTGATAAGAGCTTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGACAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAGATTGCCAGAGGATCCACATTACCAGAAACGCATTTCATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCCGACCCGACACGGCGGCCTTCGGCAAGGGAAGTTCTTGAGAATCGCATATTTGATAAGGTCAGAAATCATAAACAATCATAG 1485 43.3 MRRKSKTLRTTMTTRRKKMKGTLTRHLQVQLGQVSLAPLHLHRSSSAAAASSAVCFQDLPESEAPPMVNASDALPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDSNKECIPCPKSPEKINTVKTKRKIHESVLVHPLSPSLSGCEQVVELGNDMFGSDDVDMEKETMAMPKKENYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQDVERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDFSLSIGRYSHPFSEVDALRALYQIAKALLFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIARGSTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPTRRPSAREVLENRIFDKVRNHKQS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30457147 30461881 - Lsi02G023760.1 Lsi02g02376 657118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02376 494 SMART serkin_6 243 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02376 494 Pfam Protein kinase domain 243 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02376 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 401 - -
Lsi02g02376 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 414 490 - -
Lsi02g02376 494 SUPERFAMILY Protein kinase-like (PK-like) 236 488 IPR011009 -
Lsi02g02376 494 ProSitePatterns Protein kinases ATP-binding region signature. 249 272 IPR017441 GO:0005524
Lsi02g02376 494 PANTHER BNAA08G27310D PROTEIN 19 401 - -
Lsi02g02376 494 PANTHER BNAA08G27310D PROTEIN 414 490 - -
Lsi02g02376 494 ProSiteProfiles Protein kinase domain profile. 243 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02376 494 Gene3D Phosphorylase Kinase; domain 1 233 321 - -
Lsi02g02376 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Lsi02g02376 494 Gene3D Transferase(Phosphotransferase) domain 1 322 490 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02376 Lsi-Chr2:30457147 Lsi05g01729 Lsi-Chr5:24743827 1.13E-21 dispersed
Lsi02g02376 Lsi-Chr2:30457147 Lsi02g02260 Lsi-Chr2:29136937 2.87E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83429 PF00069 Pkinase 4.20E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02376 K06632 - csv:101213255 876.7