Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02378 ATGGCGGTGTACGGATTGGCGATCTCGACATGCACATCTACCGTCATTATTTGCCTTCAAGAAAAGCAACTTGATTTCCAACTTCTCCATGTTGACCTTTTCAATGGTGAACACAAGCAACCTCCATTTTTGGCTCTCAATCCCTTCGGCCAGATTCCAGCCCTAGAAGATGGTGACCTCACCTTATTTGGGCCAGATCTCCTATTGCAACACCAAAGCCCCAAAGAAGGAGCCATTGTGAAGCAATGGATGGAGGTAGAGTCTCACCATTACAGCCCTGCAATAACTCCCATCATCCATGAGTTCTTCACTGCTCACCTTCGAGGCCACGAGCCCGACCAGCGCCTCATCGACCAGAACTTGGAGAGCCTAGGCGCTATTCTTGACATGTACGAGCAGCGCCTAGGCAACACCAAGTACCTGGCCGGGCCGTGGTACACATTGGCCGATCTCCACCACCTCCCTTGCACGTTCTACTTCATGAAGACGCCATGGGCCTCAATGGTTAATGATCGGCCGAATGTCAAGGCTTGGTGGGATGATATTTCATCTCGCCCGGCATTTCTTAAAGTTGTTGAGGGGATGAGTACTTTTGATTTTGGTGGTGATGACAAGAAATGA 621 49.92 MAVYGLAISTCTSTVIICLQEKQLDFQLLHVDLFNGEHKQPPFLALNPFGQIPALEDGDLTLFGPDLLLQHQSPKEGAIVKQWMEVESHHYSPAITPIIHEFFTAHLRGHEPDQRLIDQNLESLGAILDMYEQRLGNTKYLAGPWYTLADLHHLPCTFYFMKTPWASMVNDRPNVKAWWDDISSRPAFLKVVEGMSTFDFGGDDKK 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30474137 30475728 + Lsi02G023780.1 Lsi02g02378 657120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02378 206 SFLD Main (cytGST) 2 185 - -
Lsi02g02378 206 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 73 206 IPR010987 -
Lsi02g02378 206 CDD GST_C_Phi 75 192 IPR034347 -
Lsi02g02378 206 Pfam Glutathione S-transferase, N-terminal domain 14 63 IPR004045 -
Lsi02g02378 206 Gene3D - 72 192 - -
Lsi02g02378 206 SFLD Glutathione Transferase (cytosolic) 2 185 IPR040079 -
Lsi02g02378 206 SUPERFAMILY GST C-terminal domain-like 72 191 IPR036282 -
Lsi02g02378 206 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 196 - -
Lsi02g02378 206 SUPERFAMILY Thioredoxin-like 2 63 IPR036249 -
Lsi02g02378 206 PANTHER GLUTATHIONE S-TRANSFERASE F13 2 196 - -
Lsi02g02378 206 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Lsi02g02378 206 Gene3D Glutaredoxin 1 71 - -
Lsi02g02378 206 Pfam Glutathione S-transferase, C-terminal domain 98 186 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02378 Lsi-Chr2:30474137 Lsi02g02381 Lsi-Chr2:30492436 5.52E-56 dispersed
Lsi02g02378 Lsi-Chr2:30474137 Lsi02g02379 Lsi-Chr2:30479526 6.44E-52 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02378 K00799 - pop:18096457 265.388