Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02379 ATGGCGAGCATCAAAGTCCATGGAAGCCCCATTTCCACTGCCACAGCCAGAGTTCTCGCTTGTCTTTACGAGAAAGATCTCGATTACGAGTTTGTTCTTCTGGATATGAAAAATAACGAGCACAAGAAACACCCCTTTCTCTCCATTAACCCGTTTGGTCAAGTTCCTGGGTTTCAAGATCGGGATCTCACCATTTTCGAATCAAGAGCCATTACTCAATATTTGGCCAACGCCTATGCCAGCAAGGGAACCCAACTGATCTCCGACGACCCAAAGAAAGCGGCGATCATATCAACATGGATCGAAGTGGAGGGCCACCATTACGATCCACCGGCAGTTGCTCTGTCGTTCGAGCATCTAGTCAAGCCGCTATTTGGACTCGGTGAAACCGATCCTGCAGCGGTGGCAGAGAATGAAGCGAAGCTGGGGAAAGTTCTTGACATTTACGAGAATCAGCTTAGCAAAAACAAGTTCTTGGCTGGGGATGAGTTCAGTTTGGCGGATCTGCACCACATCCCCAATGTGAGCTACTTGTTCATGACGCCTTCGAAGAAGCTGTTCGAGTCACGGCCGCATGTCAACGCTTGGGTGGCCGAGATCACTGCAAGGCCTTCATGGGCTAAAGTTGTTGCCTTGCGCAATCAGAGTTAA 651 49.46 MASIKVHGSPISTATARVLACLYEKDLDYEFVLLDMKNNEHKKHPFLSINPFGQVPGFQDRDLTIFESRAITQYLANAYASKGTQLISDDPKKAAIISTWIEVEGHHYDPPAVALSFEHLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSKNKFLAGDEFSLADLHHIPNVSYLFMTPSKKLFESRPHVNAWVAEITARPSWAKVVALRNQS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30479526 30480947 + Lsi02G023790.1 Lsi02g02379 657121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02379 216 CDD GST_C_Phi 92 210 IPR034347 -
Lsi02g02379 216 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 215 - -
Lsi02g02379 216 SFLD Main.5: Phi-like 1 212 - -
Lsi02g02379 216 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Lsi02g02379 216 Gene3D Glutaredoxin 1 87 - -
Lsi02g02379 216 SUPERFAMILY GST C-terminal domain-like 74 212 IPR036282 -
Lsi02g02379 216 Pfam Glutathione S-transferase, C-terminal domain 124 204 IPR004046 -
Lsi02g02379 216 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 3 215 - -
Lsi02g02379 216 Gene3D - 90 214 - -
Lsi02g02379 216 CDD GST_N_Phi 4 76 - -
Lsi02g02379 216 SFLD Glutathione Transferase (cytosolic) 1 212 IPR040079 -
Lsi02g02379 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Lsi02g02379 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Lsi02g02379 216 SUPERFAMILY Thioredoxin-like 1 82 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02379 Lsi-Chr2:30479526 Lsi02g02381 Lsi-Chr2:30492436 8.81E-107 dispersed
Lsi02g02378 Lsi-Chr2:30474137 Lsi02g02379 Lsi-Chr2:30479526 6.44E-52 tandem
Lsi02g02379 Lsi-Chr2:30479526 Lsi02g02380 Lsi-Chr2:30481717 4.00E-94 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02379 K00799 - csv:101212771 407.142