Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02380 ATGGCCGGCATCAAAGTCCATGGAGTTGCCCTTTCCACACCCACATGCAAGGTTCTAGCTTGTCTCTACGAGAAAGATCTCGAATTCGAGTTTATCAATGTCAAAATGCACGAAGGGGAACATAAGAAACCCCCTTTTCTCTCCATTAATCCTTTTGGTCAAATTCCTGGGTTCCACGATGGGGATTGGACACTTTTTGGTAAAATTTTTAAACCAATTCTCTATAAAACATGGTTGTTTGTGATTATGCACACAAGGTGTTTGATAAATTGTCTGTGTGCAGAATCCAGGGCAATCACGCAATACATCGCGAGGAATTATGTTAATAATGGAACCCAATTGATTCCCCAAGATATAAAGAAAGCAGCTACGGTATTAACATGGATTGAAGTGGAGAGTCATCATTTTGATCCACCAGCCTCAAAACTTGTGTATGAGCTCTGTTTGAAGCCAAAGCTTGGGTGGGGTGAGACAGATGTTGCAGTGGTTGAGCAAAAGGAAGGTGAGTTAGCCAAAGTTATTGATATCTATGAGAAGAAGCTGGCTGAATCCAAGTACTTGGGAGGGGAGTCCTTCAGTTTGGCTGATCTGCTCCATATTCCAACCTTAGGGTTCTTGTTGGAGACACAGACCAAGAAACTGTTTGAATCTCGGCCCCATGTCAATGCTTGGGCGGCTGATATCATGGCCAGGCCGGCTTGGGCTAAGGTGCTTGCTTTGCGCAAGTAG 729 44.17 MAGIKVHGVALSTPTCKVLACLYEKDLEFEFINVKMHEGEHKKPPFLSINPFGQIPGFHDGDWTLFGKIFKPILYKTWLFVIMHTRCLINCLCAESRAITQYIARNYVNNGTQLIPQDIKKAATVLTWIEVESHHFDPPASKLVYELCLKPKLGWGETDVAVVEQKEGELAKVIDIYEKKLAESKYLGGESFSLADLLHIPTLGFLLETQTKKLFESRPHVNAWAADIMARPAWAKVLALRK 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30481717 30482930 - Lsi02G023800.1 Lsi02g02380 657122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02380 242 CDD GST_C_Phi 120 238 IPR034347 -
Lsi02g02380 242 Pfam Glutathione S-transferase, C-terminal domain 139 232 IPR004046 -
Lsi02g02380 242 SFLD Glutathione Transferase (cytosolic) 5 231 IPR040079 -
Lsi02g02380 242 Gene3D - 118 242 - -
Lsi02g02380 242 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 242 - -
Lsi02g02380 242 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 111 IPR004045 -
Lsi02g02380 242 SFLD Main (cytGST) 5 231 - -
Lsi02g02380 242 SUPERFAMILY Thioredoxin-like 2 66 IPR036249 -
Lsi02g02380 242 SUPERFAMILY GST C-terminal domain-like 102 241 IPR036282 -
Lsi02g02380 242 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 242 - -
Lsi02g02380 242 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 118 242 IPR010987 -
Lsi02g02380 242 Pfam Glutathione S-transferase, N-terminal domain 15 66 IPR004045 -
Lsi02g02380 242 Gene3D Glutaredoxin 2 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02380 Lsi-Chr2:30481717 Lsi08g01285 Lsi-Chr8:21216527 6.45E-51 dispersed
Lsi02g02379 Lsi-Chr2:30479526 Lsi02g02380 Lsi-Chr2:30481717 4.00E-94 tandem
Lsi02g02380 Lsi-Chr2:30481717 Lsi02g02381 Lsi-Chr2:30492436 5.57E-114 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02380 K00799 - csv:101212536 371.703