Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02434 ATGTACGGTCTCAAAAACAGAGCTCAAATCCCTTCGAATCCCACCTCCATTTCCACCTTCTTCTTCATTTTCTTCCTCTTTTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCACTCCGCTCGATCCCTTTGCAATGGCACTCTCTTTCCAAACCTCTGTTTCTCAAAACTCTCCTCTTTTCCCCAATTGGCTTCCCTCTCGCCGGAAAAGCTCGCTGGCAGTGCCCTCAACTTCACTACCCGCGAGGTCCTCGGTGCCTACGCCAATTGCACCAAGCTCAAGACTGTCCTTTATGGTGGCCTGAATCCCACCGACCGCCGTGCTCTCGACGACTGTCTTGAGCTTCTCGACGGTAGCATTGCCGAGCTCAAAGCTTCGATTTTCGATCTAGCGCTGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCCGGGACTGTGAGGAGCAGGGTGGAGCTGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGCTGCGGCGGCGGGGGAGGTGTTGCCGGAGTATGGGACGGTGAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCTGTGAATGAGACGAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTTACCACTGTCGGTGAGGCCATCGCCGCCGCTCCGAATTCGAGTACCACCAGGTTTGTAATATACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGAGAAACTTGATGTTTGTCGGCGACGGGATCGGAAAGACGCTGATAAAAGCCGACCGGAACGTCGTGGACGGCTGGACTACTTTCCGATCAGCCACCGTCGCCGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTCGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGGAGCAACTCTGACTTCTCTGCATTTTACCAATGCAGCTTCATCGGCTATCAAGACACTCTCTATGTTCACTCTCTCCGTCAATTCTACCGTGACTGCGATATCTACGGTACCATCGACTTCATTTTCGGCAATGCTGCCGTCGTCTTCCAAAACTGCAACCTCTACGCTCGAAAACCCAACCCAAACCAACGCAACATATTCACTGCTCAAGGTCGCGAGGACCCTAACCAAAACACTGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCCTCCGACCTAATCCCGGTTCTTTCCTCGTTCAGAACTTACTTGGGCCGACCATGGAAGTTGTACTCGAGGACGGTTTTTCTTCGGTCGTTTATCGGTCAGTTGGCTGACCCAGCTGGGTGGCTTGAGTGGAACGGTACATTTGCATTGGATACTTTGTATTATGGGGAGTATTTGAACCGGGGGCCTGGTTCAAATACGACTGGACGAGTTACTTGGCCAGGTTATCGAGTCATTACTAACGCAACAGAAGCGAATCAGTTTACAGTCGAAGCTTTTATACAAGGTAGCTCGTGGTTGAACTCGACCGGGATTCCTTTCTTCTCCGGTTTGGCTTGA 1659 50.69 MYGLKNRAQIPSNPTSISTFFFIFFLFSFKPISSNPQIHHSARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTTREVLGAYANCTKLKTVLYGGLNPTDRRALDDCLELLDGSIAELKASIFDLALPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRSRVELYLGKIGQHLSIDLAMLKKIPGVNRAAAAGEVLPEYGTVKGGFPKWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVGEAIAAAPNSSTTRFVIYIKAGAYFENVEIERAKRNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFRTYLGRPWKLYSRTVFLRSFIGQLADPAGWLEWNGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNATEANQFTVEAFIQGSSWLNSTGIPFFSGLA 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30889968 30896617 - Lsi02G024340.1 Lsi02g02434 657176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02434 552 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Lsi02g02434 552 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Lsi02g02434 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 197 IPR035513 -
Lsi02g02434 552 Pfam Pectinesterase 240 536 IPR000070 GO:0030599|GO:0042545
Lsi02g02434 552 CDD PMEI-like_3 44 197 - -
Lsi02g02434 552 Pfam Plant invertase/pectin methylesterase inhibitor 43 174 IPR006501 GO:0004857
Lsi02g02434 552 PANTHER PECTINESTERASE 39 548 - -
Lsi02g02434 552 SMART PMEI_2 37 191 IPR006501 GO:0004857
Lsi02g02434 552 PANTHER PECTINESTERASE 39 548 - -
Lsi02g02434 552 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 194 IPR006501 GO:0004857
Lsi02g02434 552 Gene3D - 234 551 IPR012334 -
Lsi02g02434 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 196 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01732 Lsi-Chr2:23002588 Lsi02g02434 Lsi-Chr2:30889968 1.03E-84 dispersed
Lsi02g02434 Lsi-Chr2:30889968 Lsi07g00641 Lsi-Chr7:6839640 3.72E-172 dispersed
Lsi04g00186 Lsi-Chr4:1991203 Lsi02g02434 Lsi-Chr2:30889968 2.18E-138 dispersed
Lsi09g00498 Lsi-Chr9:5184085 Lsi02g02434 Lsi-Chr2:30889968 1.98E-145 dispersed
Lsi10g00656 Lsi-Chr10:9123500 Lsi02g02434 Lsi-Chr2:30889968 1.54E-121 dispersed
Lsi10g00719 Lsi-Chr10:10062257 Lsi02g02434 Lsi-Chr2:30889968 7.58E-88 dispersed
Lsi02g02434 Lsi-Chr2:30889968 Lsi02g02435 Lsi-Chr2:30917973 5.30E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02434 K01051 - csv:101205557 1006.9