Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02435 ATGGCTGCCGGAATCATCACCACTGCCGCCGCCGCCGCTTTTTACTCTCTCATCCTCATTTCCCTCTACATCACCACTTCCGCCGCCCCCACCGGGTCGGCATGCAGCTCGACCCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAACCAAACCGGCAATGTGTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCACAGAAGTTCCTCCGGCTAGTGGAGAAATACCTCCGATCCCGATCGTCTCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATCGATTACTTAACGACGTCGTTCCGGGCGGTAAACTCGACGAACAGAACGCTGCCGGAGATGAAGGCGGATGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGGATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCCACTGACACCAAGCTGTACTCTCTGTCTTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGCGGGTTCAGAAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCAAAGCCATCTACGAGACGGCGACTCGCCGGAATCTGCTGCAGACCGACGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTCGTCAGTCAAGACGGTAGCGGAAATTTTACCACCATCAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGACCGACGGGTATTTCTTGATCTTCGTGTCGGCCGGAGTTTATGAAGAATATGTGTTGATTGCGAAGAACAAAAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACAGTCGTCACCGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACGTTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAACGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACATTATACACCCATTCCCTCCGCCAATTCTACCGAGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTGCCGATGTCCAACCAGTTCAACGCCATCACAGCCCAAGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGACCTGACGAACAACAGCGGCGCCGGCGTGAAGACTTTCCTGGGGCGGCCGTGGAAGGAGTACTCGAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTAATCCGGCGGGATGGAGGGCTTGGGATGGGGATTTTGCTTTGAACACTTCGTATTATGCGGAATTTGGGAACTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACTGATGCTGGGAATTTCACGGCAGGTAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCGTATACCAGCGGCCTCACGGACTAG 1632 54.72 MAAGIITTAAAAAFYSLILISLYITTSAAPTGSACSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTNRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLATDTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQTDDGGDDQIAVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSAGVYEEYVLIAKNKRYLMMIGDGINQTVVTAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLTNNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30917973 30922114 + Lsi02G024350.1 Lsi02g02435 657177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02435 543 Pfam Pectinesterase 245 526 IPR000070 GO:0030599|GO:0042545
Lsi02g02435 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 182 IPR035513 -
Lsi02g02435 543 SUPERFAMILY Pectin lyase-like 240 540 IPR011050 -
Lsi02g02435 543 SMART PMEI_2 25 179 IPR006501 GO:0004857
Lsi02g02435 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 182 IPR035513 -
Lsi02g02435 543 Gene3D - 239 541 IPR012334 -
Lsi02g02435 543 PANTHER PECTINESTERASE 16 541 - -
Lsi02g02435 543 CDD PMEI-like_3 33 181 - -
Lsi02g02435 543 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Lsi02g02435 543 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 16 541 - -
Lsi02g02435 543 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02435 Lsi-Chr2:30917973 Lsi04g02274 Lsi-Chr4:29762910 0 dispersed
Lsi02g02434 Lsi-Chr2:30889968 Lsi02g02435 Lsi-Chr2:30917973 5.30E-126 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02435 K01051 - csv:101205321 979.163