Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02438 ATGGCTACCGATTCTCATGTCCCTACTCCAAGGGGTCTTCTCTGTAATGCTGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACTAGATTTCAGGTTCATGGACTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGTCTCGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTATTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCTGATGATGAAAATTGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTTAAGACCAGGCTTCAGACGCAGGGAATGAAATCTGGTGCGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGGTTTGCTCTTTATTATGTTGCTATTATGATCTATGTATTTTATATGGAGAAGAGGATTATAAGAATTATTGGCTCAACTCTAACAATCAATACCATATTCTACAGTGGTCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTTGCGATCCAGTTTCCAACATATGAAAAAATTAAAAGTTATTTGGCTAGAAGAGACAATACAACAACGGACAAACTCACTGCACGTGATGTTGCGGTTGCCTCATCTGTCTCCAAGATATTTGCTTCCACATTGACCTATCCACACGAGGTTGTACGATCCAGGCTTCAGGAACAGGGGTTTCACTCTGAGAAGCGTTATTCTGGCGTAGCTGATTGCGTAAAGAAAGTATTTCAGCAAGATGGTCTCCCCGGTTTCTACCGAGGGTGTGCAACCAACCTTCTCAGGACAACACCTGCTGCTGTCATCACATTTACCAGCTTTGAAATGATTCACCGTTTTCTTTCGAAAACCAAATTGCAACCACAATCCGAATACCTGGTTCACATTCACAATCACAAGGAACCCTCTGGAAACTTCTTCGTGTTCTTCCTCTGTTTTAAACCGACGTCGCATATCCATGCAATTTTCCAGTGTTATTTCGGGCGAAAATGTCCGGTGGTGGTTGTTGTTACTATTCTGTTCTTGGACTGTGTAAGCAAGCTTCTGCCCATGAAATCCGAGCAGCTTATCAAATGGCATTCTGATAAGTGGATCAAAGACCCAGAAATGGCCGCCCGCTTTCAACAAATCCAACACGCTTATTCAGGGATTCTGCGATTTCATGATCGAAATGGTATCGATGATGAAGAGCGCTACACAGCAGGTAGAAAAGATCGATTAGGTTTATATTTGTTTGGATTCTGCGATTTCCAGATCGAATTTGCAATGAATCGTATTGAATTGACAGGAAAAGAAGAAGAAGATGAACAATTTGGAGGATCTAAGAGGATCATTAGTGGAGATGATGGAAGCCGA 1512 43.06 MATDSHVPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLGSDDENCQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGALPYRNTVSALRRIASEEGIRGLYRFALYYVAIMIYVFYMEKRIIRIIGSTLTINTIFYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLSKTKLQPQSEYLVHIHNHKEPSGNFFVFFLCFKPTSHIHAIFQCYFGRKCPVVVVVTILFLDCVSKLLPMKSEQLIKWHSDKWIKDPEMAARFQQIQHAYSGILRFHDRNGIDDEERYTAGRKDRLGLYLFGFCDFQIEFAMNRIELTGKEEEDEQFGGSKRIISGDDGSR 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30946157 30952139 - Lsi02G024380.1 Lsi02g02438 657180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02438 504 Pfam Mitochondrial carrier protein 250 336 IPR018108 -
Lsi02g02438 504 Pfam Mitochondrial carrier protein 15 101 IPR018108 -
Lsi02g02438 504 Pfam Mitochondrial carrier protein 109 172 IPR018108 -
Lsi02g02438 504 Gene3D Mitochondrial carrier domain 201 349 IPR023395 -
Lsi02g02438 504 MobiDBLite consensus disorder prediction 484 504 - -
Lsi02g02438 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Lsi02g02438 504 SUPERFAMILY Mitochondrial carrier 205 328 IPR023395 -
Lsi02g02438 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Lsi02g02438 504 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 172 IPR044712 GO:0006862|GO:0055085
Lsi02g02438 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 332 IPR018108 -
Lsi02g02438 504 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 172 - -
Lsi02g02438 504 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 205 337 - -
Lsi02g02438 504 Gene3D Mitochondrial carrier domain 1 194 IPR023395 -
Lsi02g02438 504 SUPERFAMILY Mitochondrial carrier 13 182 IPR023395 -
Lsi02g02438 504 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Lsi02g02438 504 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Lsi02g02438 504 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Lsi02g02438 504 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Lsi02g02438 504 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Lsi02g02438 504 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 205 337 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00639 Lsi-Chr1:5147862 Lsi02g02438 Lsi-Chr2:30946157 2.00E-11 dispersed
Lsi02g02438 Lsi-Chr2:30946157 Lsi09g00619 Lsi-Chr9:6817617 1.06E-85 dispersed
Lsi02g02438 Lsi-Chr2:30946157 Lsi08g01194 Lsi-Chr8:20513216 4.81E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02438 K15115 - csv:101204681 538.11