Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02441 ATGGCGACGAGGAATCGAACTACACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCATCGGCAGCTGGTTCGAGTGGACCGGTTATTGAGATGGTGAGTTCGTCTCTGCTTGGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTAGCACTGAAGATCCAGGACCTTCGAGCAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTAGATGATTCTGAAGAAATAACTGTTGATATACAGAAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACGCTAGAGATTACAAATCTTTTGAAAACCTCTGAGAAGAGGTTGAAGAAATTTTCTAGTAATGGGTCCTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCACTGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTTTCCAGGAGGATGACGGATATGATGAATTTGGAACCAATGAAAACCAAACAATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCAGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTCAAACAGCTTCAGAAGGCCTTGACTCACCCTCCGTGGACAAACCTTGTGGAGGAACCCTTAGGCAGAAAAGAGTCAGAAGAATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTCATTATGTGTTTCGTAATGCTGGTCCTGTTGATACTGAAGGAGATAATTATGTAACTAATGTTTGCCTTTTGGCTTATTGTTGA 1038 42.77 MATRNRTTQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLGSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVDIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKFSSNGSSEDINIRKNVQRSLATELQNLSMDLRRRQSLYLKRLQQQKEGHDGIDLEINLNGNRTFQEDDGYDEFGTNENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGFKQLQKALTHPPWTNLVEEPLGRKESEEWRNGEMCNSACHYVFRNAGPVDTEGDNYVTNVCLLAYC 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30967984 30972358 + Lsi02G024410.1 Lsi02g02441 657183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02441 345 Gene3D - 73 278 - -
Lsi02g02441 345 CDD SNARE_syntaxin16 227 285 - -
Lsi02g02441 345 PANTHER SYNTAXIN 1 321 IPR045242 -
Lsi02g02441 345 MobiDBLite consensus disorder prediction 47 67 - -
Lsi02g02441 345 SMART SynN_4 67 182 IPR006011 GO:0016020
Lsi02g02441 345 MobiDBLite consensus disorder prediction 47 63 - -
Lsi02g02441 345 MobiDBLite consensus disorder prediction 1 33 - -
Lsi02g02441 345 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Lsi02g02441 345 SUPERFAMILY t-snare proteins 72 279 IPR010989 GO:0016020|GO:0016192
Lsi02g02441 345 SMART tSNARE_6 218 286 IPR000727 -
Lsi02g02441 345 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lsi02g02441 345 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02441 Lsi-Chr2:30967984 Lsi11g00612 Lsi-Chr11:6525802 2.20E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02441 K08489 - csv:101204192 514.998