Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02475 ATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGCGCCGAAAGGGTGCTCGCGAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGACGATGGACCGGATACTGTTGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCGTCTTATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGCTGTAGAACAAACCAAATGAAAGGCAACTTAATTCTTCAACTTAGAGCATCGAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCACGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCACCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGGTTTAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCGCTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGCGCTCCTCATAGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGGAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATCTGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACACGTTGTTTATGTCCATCAGAATAGAGAATCTCCCGCTCTTGGCTTCATCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCAGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACGTTGCGAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACCACAGTGAGAACTCTACTCAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTTAGATTCTCTGAGACCGTGGCTCAGAGTGATGTCGACGAGGCTTTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGGGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2175 43.86 MSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQMKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFIPLESSVLRAYISAARRLSPYVPKDLEEYVASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31241043 31248036 - Lsi02G024750.1 Lsi02g02475 657217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02475 724 Gene3D - 149 277 IPR012340 -
Lsi02g02475 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Lsi02g02475 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 Pfam MCM OB domain 149 279 IPR033762 -
Lsi02g02475 724 Gene3D - 176 230 - -
Lsi02g02475 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Lsi02g02475 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Lsi02g02475 724 Gene3D - 15 106 - -
Lsi02g02475 724 Pfam MCM N-terminal domain 20 138 IPR027925 -
Lsi02g02475 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 702 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 Gene3D - 317 649 IPR027417 -
Lsi02g02475 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 702 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi02g02475 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02475 K02210 MCM7, CDC47; DNA replication licensing factor MCM7 [EC:5.6.2.3] - csv:101219064 1400.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00004 Lsi-Chr1:97300 Lsi02g02475 Lsi-Chr2:31241043 1.44E-108 dispersed
Lsi02g02475 Lsi-Chr2:31241043 Lsi11g01129 Lsi-Chr11:19722511 1.08E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g390 . Blo06g00534 . Bda10g00656 . . Bma10g01097 . . Cmo17g01008 . . . . . . . Bhi09g00842 . . . . . . Cla09g00472 Cam09g0512 Cec09g0509 Cco09g0502 Clacu09g0515 . Cre09g0492 . . . . Lsi02g02475 Csa07g01905 . Cme01g02199 . . . . Bpe10g00498 . . Bma15g00493 . . . . Cma17g01031 . Car17g00984 . Cpe12g00890 . . . . . . . . . . . . . . . . Chy01g01752 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G14700 52.6 2.6e-76 283.9
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G14700 68.1 5.7e-55 213.0
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G12620 55.3 1.1e-82 305.1
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G12620 69.5 6.8e-56 216.1
Lsi08g01455 . 2 372 Core DNA Replication Machinery Family AT2G37560 63.6 2.3e-138 488.8
Lsi04g01057 . 6 378 Core DNA Replication Machinery Family AT2G01120 63.4 1.4e-134 476.5
Lsi09g01574 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 8.6e-175 610.5
Lsi11g00986 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.4 1.7e-94 342.8
Lsi11g01609 . 80 903 Core DNA Replication Machinery Family AT1G79150 54.4 4.0e-229 791.6
Lsi03g01268 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1352.8
Lsi01g00160 . 107 687 Core DNA Replication Machinery Family AT5G46280 78.6 4.3e-259 890.6
Lsi11g01129 . 1 931 Core DNA Replication Machinery Family AT2G16440 69.3 0.0e+00 1105.9
Lsi11g00378 . 1087 1862 Core DNA Replication Machinery Family AT2G07690 73.6 0.0e+00 1080.9
Lsi01g00004 . 7 923 Core DNA Replication Machinery Family AT5G44635 61.5 2.1e-310 1061.6
Lsi02g02475 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.0
Lsi10g01424 . 36 481 Core DNA Replication Machinery Family AT2G29680 50.6 7.8e-127 451.1
Lsi10g01424 . 37 483 Core DNA Replication Machinery Family AT1G07270 52.1 1.7e-120 429.9
Lsi02g02100 . 758 1350 Core DNA Replication Machinery Family AT3G25100 76.4 2.5e-257 884.8
Lsi03g02053 . 26 672 Core DNA Replication Machinery Family AT3G09660 66.3 2.9e-237 818.5
Lsi03g02054 . 12 181 Core DNA Replication Machinery Family AT3G09660 81.2 6.6e-72 269.2
Lsi03g00736 . 22 377 Core DNA Replication Machinery Family AT2G14050 67.4 9.9e-151 530.8
Lsi03g00738 . 16 198 Core DNA Replication Machinery Family AT2G14050 53.0 2.5e-45 180.6
Lsi10g00493 . 1890 2300 Core DNA Replication Machinery Family AT2G20980 55.5 8.0e-119 424.1
Lsi02g02726 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.3 9.5e-76 280.0
Lsi03g00967 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 4.9e-61 230.7
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Lsi05g02052 . 6 171 Core DNA Replication Machinery Family AT5G49010 57.2 1.3e-45 179.9
Lsi10g00533 . 1 1707 Core DNA Replication Machinery Family AT5G67100 52.7 0.0e+00 1597.8
Lsi02g00133 . 2 572 Core DNA Replication Machinery Family AT1G67630 53.8 5.1e-181 631.3
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi08g00158 . 10 382 Core DNA Replication Machinery Family AT5G41880 58.0 2.9e-125 445.7
Lsi08g00157 . 57 255 Core DNA Replication Machinery Family AT5G41880 60.4 1.1e-76 284.3
Lsi01g01175 . 1 968 Core DNA Replication Machinery Family AT5G63960 69.8 0.0e+00 1424.5
Lsi03g01734 . 1 550 Core DNA Replication Machinery Family AT2G42120 57.6 1.9e-177 619.0
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi10g01177 . 1 1996 Core DNA Replication Machinery Family AT1G08260 64.8 0.0e+00 2626.3
Lsi02g01714 . 8 1499 Core DNA Replication Machinery Family AT1G08260 65.4 0.0e+00 1877.4
Lsi02g01713 . 15 187 Core DNA Replication Machinery Family AT1G08260 55.6 1.1e-44 180.3
Lsi10g01177 . 25 2103 Core DNA Replication Machinery Family AT2G27120 62.0 0.0e+00 2599.7
Lsi02g01714 . 31 1499 Core DNA Replication Machinery Family AT2G27120 63.2 0.0e+00 1778.5
Lsi02g01713 . 24 187 Core DNA Replication Machinery Family AT2G27120 53.9 5.6e-41 167.9
Lsi02g00021 . 74 324 Core DNA Replication Machinery Family AT5G22110 78.1 5.8e-119 424.9
Lsi02g00022 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.2 2.6e-58 223.4
Lsi10g01127 . 71 1019 Core DNA Replication Machinery Family AT5G22010 59.9 1.9e-285 978.8
Lsi07g01383 . 54 433 Core DNA Replication Machinery Family AT1G63160 70.3 3.4e-139 491.5
Lsi01g01707 . 1 357 Core DNA Replication Machinery Family AT5G27740 79.3 1.3e-165 579.3
Lsi04g02414 . 36 285 Core DNA Replication Machinery Family AT1G21690 62.5 1.1e-97 353.6
Lsi08g00447 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.6 1.5e-156 549.3
Lsi11g00167 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-253 871.7
Lsi07g01137 . 32 704 Core DNA Replication Machinery Family AT2G06510 51.0 1.2e-198 689.9
Lsi06g01410 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 2.7e-251 864.8
Lsi07g01137 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.5 4.0e-232 801.6
Lsi06g01410 . 1 618 Core DNA Replication Machinery Family AT5G61000 67.4 2.7e-246 848.2
Lsi07g01137 . 5 799 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-228 790.0
Lsi06g00020 . 1 385 Core DNA Replication Machinery Family AT5G26680 78.8 2.2e-175 612.1
Lsi07g00045 . 42 374 Core DNA Replication Machinery Family AT2G25100 59.5 7.1e-106 380.6
Lsi10g01227 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.2 3.8e-298 1020.8
Lsi10g01227 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.6 5.9e-244 840.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009694 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 33