Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02475 ATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGCGCCGAAAGGGTGCTCGCGAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGACGATGGACCGGATACTGTTGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCGTCTTATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGCTGTAGAACAAACCAAATGAAAGGCAACTTAATTCTTCAACTTAGAGCATCGAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCACGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCACCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGGTTTAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCGCTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGCGCTCCTCATAGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGGAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATCTGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACACGTTGTTTATGTCCATCAGAATAGAGAATCTCCCGCTCTTGGCTTCATCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCAGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACGTTGCGAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACCACAGTGAGAACTCTACTCAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTTAGATTCTCTGAGACCGTGGCTCAGAGTGATGTCGACGAGGCTTTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGGGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2175 43.86 MSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQMKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFIPLESSVLRAYISAARRLSPYVPKDLEEYVASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31241043 31248036 - Lsi02G024750.1 Lsi02g02475 657217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02475 724 Gene3D - 149 277 IPR012340 -
Lsi02g02475 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Lsi02g02475 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 Pfam MCM OB domain 149 279 IPR033762 -
Lsi02g02475 724 Gene3D - 176 230 - -
Lsi02g02475 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Lsi02g02475 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Lsi02g02475 724 Gene3D - 15 106 - -
Lsi02g02475 724 Pfam MCM N-terminal domain 20 138 IPR027925 -
Lsi02g02475 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 702 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 Gene3D - 317 649 IPR027417 -
Lsi02g02475 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 702 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lsi02g02475 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lsi02g02475 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00004 Lsi-Chr1:97300 Lsi02g02475 Lsi-Chr2:31241043 1.44E-108 dispersed
Lsi02g02475 Lsi-Chr2:31241043 Lsi11g01129 Lsi-Chr11:19722511 1.08E-106 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02475 K02210 - csv:101219064 1400.19