Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02490 ATGGAGGAGGTGGCGGCAGCCAATTCGTTGCGATATCAGTTTCTCGATGATGACGAGAACAAGAATCATCTAGGGTTCATGGAGCTTCTCAGTGTGGATCAAGATTTCTCATCGCAATTTGATGTCTTTGAAACATCATCGTCTTTATCGTCTTCCCTGATTTCAAATCCTGTTATGAACTCTGAGAATTTGGAGATTTGGAATCAATGGCCGACCACACCGAATTACTCGTCGTCGATCTCATCCACCTCGAGTGAGATCGTCAATGGCGAGCCGACTAAGCTAAATCAAGAGGGAGGAGAGAAACAACATCGCCAACAAACTGTAAAAACTAACAAGCAGTTGAAAACAAAGAAGACGAGTACAAAGAAGAAAGATCAAGAACAACGATTCGCTTTCATGACAAAGAGTGAAGTTGATCATTTGGAAGATGGATATAGATGGAGAAAGTATGGTCAAAAAGCAGTGAAAAACAGCCCTTATCCTAGGAGCTATTATCGTTGCACTAGTGTCGCATGCAATGTAAAAAAACGGGTGGAGAGATGTTTGCAAGATTCAAGCATTGTCGTAACAACATATGAAGGCCAACACACTCACCCTAGCCCCATTATGGCACGATCAACCTTCTTTCCTCCACCCATCTCAGTCACCCTCTACGATGGTTATTCATATCAAAATAGTCATAGTTCAAATTTTATCAACGACCCAAAGGGCTTTGTATCATCATCGTTTCATCAACCGTGTGGCATTGCTTCCTCCAATCGAGCTACTCAATTGTTGGGTGCCACTATTGACCATGGACTACTTCAAGATATCACTCCTTTCCAGTTTGATGAGTTGGCATGGAGAGATGGTCCGATCTGA 864 42.71 MEEVAAANSLRYQFLDDDENKNHLGFMELLSVDQDFSSQFDVFETSSSLSSSLISNPVMNSENLEIWNQWPTTPNYSSSISSTSSEIVNGEPTKLNQEGGEKQHRQQTVKTNKQLKTKKTSTKKKDQEQRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSVACNVKKRVERCLQDSSIVVTTYEGQHTHPSPIMARSTFFPPPISVTLYDGYSYQNSHSSNFINDPKGFVSSSFHQPCGIASSNRATQLLGATIDHGLLQDITPFQFDELAWRDGPI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31363690 31366926 + Lsi02G024900.1 Lsi02g02490 657232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02490 287 Pfam WRKY DNA -binding domain 143 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g02490 287 SUPERFAMILY WRKY DNA-binding domain 134 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g02490 287 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 249 IPR044810 GO:0003700
Lsi02g02490 287 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 26 249 - -
Lsi02g02490 287 MobiDBLite consensus disorder prediction 78 128 - -
Lsi02g02490 287 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g02490 287 MobiDBLite consensus disorder prediction 78 92 - -
Lsi02g02490 287 Gene3D WRKY domain 125 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g02490 287 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02490 Lsi-Chr2:31363690 Lsi05g01411 Lsi-Chr5:22051870 9.80E-43 dispersed
Lsi02g02490 Lsi-Chr2:31363690 Lsi03g01124 Lsi-Chr3:21462995 4.95E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24907 PF03106 WRKY 2.90E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02490 - - bhj:120085316 464.151