Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02519 ATGGACGATAGCTGTGCGGTGTGTGCCGAGACTCTTGAATGGGTTGCCTATGGGTCTTGCGGCCATCGAGATGTCTGTTCCACCTGCGTTGCTCGTCTTCGATTCATTTGTGGTGATCGCCGCTGTTGCATCTGCAAGTCCGAATCCGCCGTCGTGTTCGTCTCTAAGGCCTTGGGAGATTATACAAGGACAATTAACGACTTCACAGTCTTTCCTTCTGAACCAAGAGAGGGTCGTAGTGGATCCTATTGGTATCATGAAGACACACAAGCATTTTTTGATGATGTTGATCACTACAAGATGATAAAAGCAATGTGCAGGTTGTCATGCAGTGTGTGTGATAAGATAGGTGAAGATCAACCAAATGATGCCTCAAAGCGCCGAGGAAGGTTTCGGAATATTGAGCAGCTAAAGGGTCATTTGTTTCATCGACATAAGTTGTTTATGTGCAGCCTTTGTTTGGAAGGCAGGAAGGTTTTTATTTGTGAACAAAAGCTATATAATAGGGCACAATTGAATCAGCATATGCACACTGGTGACTCTGAGGTCGACGGAAGTGAGAGTGAGAGAGGTGGTTTCACCGGGCACCCTATGTGTGAATTTTGCAGAACTCCATTTTATGGAGATAATGAGCTGTATACTCATATGTCAACTGAGCATTATACATGTCATATATGCCAAAGGCTCCATCCTGGACAGTATGAATACTATAAGAATTATGATGACCTAGAGGCAAACGAAGCCTGCCTTGCTAAAAAGTTTATAGTGTTCCAATCTGAAGCGGAAATGAAGATACCGACCAGTTTTCGATATCGAAGAAGTAATGAACAAGATAATCGCCGTGGTAGACGGACATTTCGTCGTGATTCTTCTGATGATCTACTTTCTTTGGCGATTCAAGAAAGTCTTGAAACAGCTAATGTTGATGACACCAATCATGACCCATTACCTAGCGGACAAGTGGCCTCAGATCAAGAAAATATAAGCAACACTGATCCCTTGATCGAACCATTTGAAGCATTAGCAACAACAGATCCTGAATCAGCTTCTAGATACCTTCAAGCCTTGGGCCATTCTAGGAATTCTCAATTGGAGCAATCATCCTTTCCTCCCCTTTCAACAGCATCGAGCAGTAGCCATCCAAAGCCCAGTCAAGACAAAGACGCTATACATAATAACAGTATGGCAGCTCATCTTCGCCGCCAGAGGAAGAATGTCACCGTTCTAAATTCTGCAGGTTGGCCAAAATCAAGTCGTGCCCCTGTGCTACCATCAAATAACTCATCTCAAGCTTGGCCTGCAATAAATGTCAATCATGCAGCATCCAGCAGTTCTGCGCAGACTAAGGGTGTTGTCACCATTAATAATGCCCCTTCAGTCTCTGCTTACTCAAATGCTGCTCAGATGCATGCAAAGGCTCGATCTAGTTCTTCAAGTGGATCAGGTAGTAGCAGTAGGATCAGCCACTCTGCTTCCGCTCCCAGTCTCACCGACATTGCCTATACTGAACCCTCAGTTAATGAATTCCCTCCAGTATCTGCAGCACAGGCACGAAAGCCGCTCTCAAGTAGCCAGAGTTCAATGAACATGGAAGATGTGCAGACAGCAAACAAATCTCTAGTTGAAAAGATACGTGCTGCACTTGATTTTGACCAAGATAGATATGCCATTTTTAAAGATATATCTGCACAATATCGTCAGGGTCAGATTGACACAGAAATGTATCTAGACTGTGTGCAGCAGTTCGGTTTGTCACATCTTCTGCTTGAGTTGGCTAGGCTCTGTCCTGATCCTCAGAAACAGAAAGAACTTGTGGAGACCTATAATGCTAGTTTTCATAAAGATGTGATCCCAGAAAATGGTAGGGCTCTAGATGGTATTCAAATTAAAGACAAAAGTAAGGGAAAGAAAGGTAAAGGGAAGTCTATAGAAGTTAAAGACAGCAGTTCCAAGGACAAATTAGCAGATAGTATCTTGAGCAGTGTTCGGGAATTGCAGTCGAGTTTCAGGCCATTGGAGGAAAATGTAGAGGTATTATCAAAGGGTGAGTACCGTGCTTCGAAAGGGAAACTGAAGATATCATCTGATGAGCAGCAAGGTGGGACAGGAGGACAAAACAATCAACCGTCTACTGGTCTATCAAACCAAAGTACTGGGGATGGGGGTGGTGGGGGGAGCAAACAAAAAAAGAAAACCTCCAAGTTCCATAGAGTTCGTTTAGGTGATGGTTCGGTTGCTGCACTCTTAGATCTAAAAAACTCCAATCTCACTTCAGACCCAGACCCAGTCGAAAGAGTAGAGGACGGGAACAATGCTGCAGCAGGGGCATTGCCTGTTCGGGGCGTTTGGCGAAATGGTGGTCAGAAGCTTTTCTCCTAG 2379 44.35 MDDSCAVCAETLEWVAYGSCGHRDVCSTCVARLRFICGDRRCCICKSESAVVFVSKALGDYTRTINDFTVFPSEPREGRSGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDKIGEDQPNDASKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHMHTGDSEVDGSESERGGFTGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEANEACLAKKFIVFQSEAEMKIPTSFRYRRSNEQDNRRGRRTFRRDSSDDLLSLAIQESLETANVDDTNHDPLPSGQVASDQENISNTDPLIEPFEALATTDPESASRYLQALGHSRNSQLEQSSFPPLSTASSSSHPKPSQDKDAIHNNSMAAHLRRQRKNVTVLNSAGWPKSSRAPVLPSNNSSQAWPAINVNHAASSSSAQTKGVVTINNAPSVSAYSNAAQMHAKARSSSSSGSGSSSRISHSASAPSLTDIAYTEPSVNEFPPVSAAQARKPLSSSQSSMNMEDVQTANKSLVEKIRAALDFDQDRYAIFKDISAQYRQGQIDTEMYLDCVQQFGLSHLLLELARLCPDPQKQKELVETYNASFHKDVIPENGRALDGIQIKDKSKGKKGKGKSIEVKDSSSKDKLADSILSSVRELQSSFRPLEENVEVLSKGEYRASKGKLKISSDEQQGGTGGQNNQPSTGLSNQSTGDGGGGGSKQKKKTSKFHRVRLGDGSVAALLDLKNSNLTSDPDPVERVEDGNNAAAGALPVRGVWRNGGQKLFS 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31627520 31633801 + Lsi02G025190.1 Lsi02g02519 657261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02519 792 MobiDBLite consensus disorder prediction 753 792 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 471 490 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 688 739 - -
Lsi02g02519 792 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 305 326 - -
Lsi02g02519 792 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lsi02g02519 792 PANTHER EBR1 1 790 - -
Lsi02g02519 792 PANTHER ZINC FINGER PROTEIN 598 1 790 IPR044288 GO:0061630|GO:0072344
Lsi02g02519 792 MobiDBLite consensus disorder prediction 629 648 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 511 531 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 517 531 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 359 389 - -
Lsi02g02519 792 MobiDBLite consensus disorder prediction 693 723 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02519 K22381 - csv:101214376 1358.58