Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02522 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGCTATCCACAAGGCTGCTGATAACAGCAGCATGTACCAAGTAAAAAATTCAGCAGGAGCTGCTGGTCTGAACAAGGATTCATGTTATGTACGAACTGATGAAAGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATGCGGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTAAAGGAGGTTACAAAAAATTTCGATGCTGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCCAGCAAACAATCAGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTGAAGCACGATAATTTTCTAAACTTGATTGGGTACTGTGTTGATGGAAATTCTCGAATTCTTGCATACGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGGTTGGAGTATTTGCATGAAAAGGTTGATCCTCATGTCATCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATTATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCCGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACTTTGCCTCGAGGACAGCAAAGCCTGGTGACATGGGCCACGCCCAAACTTTGCGAGGATAAAGTTAAGCAGTGTGTTGATGAAAAACTAGGAGATGAGTATCCTCCTAAGTCAGTTGCAAAGGTACCCATACTGTTCTTTTCTTGCTTATATAGAAATTGTATTAAACCAACATTTCTCCATTTAAGGGGAAGGGGAACAGAGCCCGAAGAGGGACATTTTGCAGCGGTTGCTGCATTGTGCGTTCAATATGAAGCAGATTTCAGGCCAAACATGAGTATTGTGGTCAAAGCTCTGCAACCTCTGTTAAATGTCCGACCTGGTCCTGGCGGTGAAGCACCAACTCTTTAA 1221 43.65 MGCFGCCEEDAIHKAADNSSMYQVKNSAGAAGLNKDSCYVRTDESYHKRQTAPKSPPIVKMRPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHDNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHVIHRDIKSSNVLIFDDYLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDEKLGDEYPPKSVAKVPILFFSCLYRNCIKPTFLHLRGRGTEPEEGHFAAVAALCVQYEADFRPNMSIVVKALQPLLNVRPGPGGEAPTL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31660773 31666300 + Lsi02G025220.1 Lsi02g02522 657264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02522 406 SUPERFAMILY Protein kinase-like (PK-like) 56 389 IPR011009 -
Lsi02g02522 406 Gene3D Transferase(Phosphotransferase) domain 1 156 396 - -
Lsi02g02522 406 ProSiteProfiles Protein kinase domain profile. 81 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02522 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lsi02g02522 406 SMART serkin_6 81 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02522 406 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 336 - -
Lsi02g02522 406 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 363 401 - -
Lsi02g02522 406 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Lsi02g02522 406 Pfam Protein tyrosine and serine/threonine kinase 86 291 IPR001245 GO:0004672|GO:0006468
Lsi02g02522 406 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 336 - -
Lsi02g02522 406 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 363 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02522 Lsi-Chr2:31660773 Lsi03g01118 Lsi-Chr3:21364216 1.00E-86 dispersed
Lsi03g01751 Lsi-Chr3:28900433 Lsi02g02522 Lsi-Chr2:31660773 9.75E-167 transposed
Lsi07g00068 Lsi-Chr7:685850 Lsi02g02522 Lsi-Chr2:31660773 1.04E-168 transposed
Lsi08g00348 Lsi-Chr8:9539856 Lsi02g02522 Lsi-Chr2:31660773 1.25E-171 transposed
Lsi02g02522 Lsi-Chr2:31660773 Lsi03g01155 Lsi-Chr3:21892566 1.19E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83434 PF07714 PK_Tyr_Ser-Thr 3.30E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02522 K13436 - csv:101215263 666.766