Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02534 ATGATGGATTCCGGCAACCTTTCCTCCTCCTCCTCCTTGCCCCCTCCAATTTCCGTCGGAAACTTCGGGCTCTGGCCACTCCTCGATGTCCAAATCTTGGAGATCTCTTTCGCTCTTTTTGTGTTCTTAGTCATCCATGTCGTTAGACAGAAGAGACATTATGACTTGCCTGTGTGGCCAATCGTTGGTATGTTACCGGCTTTGATTACAGCAACACGTGAAAATATCTACGAGTGGATTACTGACCTCTTATGTCGTCACAAGGGCACGTTTCAATTTCGAGGCCCCTGGTTTACTAGTCTCAATTGTGTCGTCACTGCTGATCCTCGAAACTTGGAGCACCTTCTCAAGACCAAATTTTCTTCCTACCCAAAAGGGTCATTCTTCCGCGACACAGTGAGAGACCTACTCGGTGACGGAATATTTGGGGCAGACGACGAGACGTGGCAACGACAGAGGAAGGTGGCGAGCATTGAGTTTCACTCGGCGAGATTTCGACAAATGACGGTGGAGTCGTTGGTGGAGCTCGTGCACTCAAGGTTGGAAGCGGTGTTGGCGGATTTCGCGGGACGGTCGGAGGAGGTGGACCTGCAGGATGTTCTTTTGAGGTTGACGTTTGACAATGTGTGTATGATTGCCTTTGGGGTGGATCCTGGCTGCTTGCGCGTCGGATTGCCAGAAATTCCATTTGCTAAGGCCTTTGAGGATGCCACTGAAGTCACTGTTATACGCTTCATCTCACCTACTTTCGTATGGAAAGTCCTGAGGTATCTGAACTTGGGAATGGAAAAGAAGTTGAAGCAATCGATCAAAGCCGTTGACGAATTTGCAGAGAACGTGATTCAAACACGGAAGAGAGAACTCTCTATGGCAGCGCAAGCACAAGCCGATAACCAAAGATCCGACCTATTGACTGTATTCATGAAGCTAAGAGATGAGCAAGGGCGACCATTCTCCGACAAGTTTCTTAGAGATATTTGCGTCAATTTCATTCTCGCCGGAAGAGACACATCTTCCGTAGCATTGAGTTGGTTCTTCTGGTTGCTCGATCAAAATTCTGGTATAGAAGACAAAATTCTAGCAGAAATTTGCAGAATCGTAGGCGAACGAGAAGAGGCCAAAACCAAAGAGCTTCGATTCGATTCGTTAGTGTTCAAACCAGAGGAAATCAAGAAAATGGAGTATTTGCATGCCGCCATTTCCGAAGCCCTAAGATTGTATCCATCAGTTCCAGTCGATCACAAAGAGGTCGTGGAGGACGATGTATTCCCAGACGGAACGATTATGAAGAAAGGAACGAAAATCATCTATGCAATATACGCAATGGGAAGAATGGAAGCGATTTGGGGGAAAGATTGTCGCGAATTCAAACCTGAGAGATGGATGAGAGATGGTCGGTTCATGAGTGAATCAGCATATCGATTCACAGCCTTCAATGGCGGCCCTCGATTGTGCCTTGGAAAGGATTTTGCGTACTATCAAATGAAATACGTCGCCGCTTCGATCATCGTCCGGTATCGAGTGGCAGTGGTGACGAACCATCCAGTGGAGCCGAAGCTTGCCCTAACTTTCTACATGAAGAACGGTCTAAAGATCAATTTAATTAAACGAGAAGAGGAACAGATTTAA 1629 46.9 MMDSGNLSSSSSLPPPISVGNFGLWPLLDVQILEISFALFVFLVIHVVRQKRHYDLPVWPIVGMLPALITATRENIYEWITDLLCRHKGTFQFRGPWFTSLNCVVTADPRNLEHLLKTKFSSYPKGSFFRDTVRDLLGDGIFGADDETWQRQRKVASIEFHSARFRQMTVESLVELVHSRLEAVLADFAGRSEEVDLQDVLLRLTFDNVCMIAFGVDPGCLRVGLPEIPFAKAFEDATEVTVIRFISPTFVWKVLRYLNLGMEKKLKQSIKAVDEFAENVIQTRKRELSMAAQAQADNQRSDLLTVFMKLRDEQGRPFSDKFLRDICVNFILAGRDTSSVALSWFFWLLDQNSGIEDKILAEICRIVGEREEAKTKELRFDSLVFKPEEIKKMEYLHAAISEALRLYPSVPVDHKEVVEDDVFPDGTIMKKGTKIIYAIYAMGRMEAIWGKDCREFKPERWMRDGRFMSESAYRFTAFNGGPRLCLGKDFAYYQMKYVAASIIVRYRVAVVTNHPVEPKLALTFYMKNGLKINLIKREEEQI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31830474 31832899 - Lsi02G025340.1 Lsi02g02534 657276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02534 542 PRINTS E-class P450 group I signature 397 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS E-class P450 group I signature 485 508 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS E-class P450 group I signature 475 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS P450 superfamily signature 398 409 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS P450 superfamily signature 476 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS P450 superfamily signature 485 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 PANTHER CYTOCHROME P450 86B1-LIKE 20 537 - -
Lsi02g02534 542 Gene3D Cytochrome P450 55 542 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 478 487 IPR017972 GO:0005506|GO:0016705
Lsi02g02534 542 PANTHER CYTOCHROME P450 20 537 - -
Lsi02g02534 542 SUPERFAMILY Cytochrome P450 57 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g02534 542 Pfam Cytochrome P450 57 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02534 Lsi-Chr2:31830474 Lsi09g00245 Lsi-Chr9:2581643 8.53E-155 dispersed
Lsi11g00985 Lsi-Chr11:16390830 Lsi02g02534 Lsi-Chr2:31830474 2.66E-103 dispersed
Lsi02g02534 Lsi-Chr2:31830474 Lsi02g02535 Lsi-Chr2:31836786 1.58E-39 tandem
Lsi02g02534 Lsi-Chr2:31830474 Lsi03g01176 Lsi-Chr3:22115304 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02534 K15402 - csv:101212202 979.163