Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02546 ATGGCGGAATCCGAGCATCGCGCCAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCCGGTTATGTAAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACACATAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAAGATGTAGCTGGAATCATTCAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTTCTATCCTACATCGTGCACTTGTTGAGAAAAGCCATGGCATAAAAAGTATAGAAAGAGCTGTTGAGAAGAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTCGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTAAGTCCATGAAAAAGAAACTGCCATGGCTAAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAAAATGGAAAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCACATTAATGATAATCACAAGAAAAGGATGGAACTTCAGGAATCTGAAAACCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACGAGCTAAAGAGGAACTCGAAGCTGCTGAATTCGAACTTCAGAATTTGCCTCCTTACGAACACCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCTGCAAGTCAGAAGAGACTCATGAAGTCAGAGATTGAGAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTTAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCACATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTGATGATCGTGACATTATGGTAAAAAACTTGGGCTCATTTGGCGTTCCTGTCCTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAAGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCCCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAGAAGGCAGATGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATATGGTGGTCATATGTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTACTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCGCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGGCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGACGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGGCGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTTGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGTAACTGAAATTAAGCATTTGCTTCTTGAGGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAGAAGGTTGCTCTGCAAGCATCAGTGCAGTTCGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTTTCAGCTGCCAAGAAGTATGCAGACTCTATTGCTCCGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATATTTCTCAAGCTAATTCCATTCTATTCTTAAACCGTAACGTGCTTGAGGAATACGAACATCGTCAGTGTCAGATAAACACCATTGCACGGAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGTGA 2634 40.55 MAESEHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLSILHRALVEKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVKSMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQKMEKAKLDAKTKKYSTHINDNHKKRMELQESENRLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRARKNELEESVSGLEENCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCVTEIKHLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYRQQLSAAKKYADSIAPITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNRNVLEEYEHRQCQINTIARKLEADKHELRKCMAEVDELK 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31920606 31936556 - Lsi02G025460.1 Lsi02g02546 657288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02546 877 Coils Coil 248 279 - -
Lsi02g02546 877 Gene3D - 24 213 IPR027417 -
Lsi02g02546 877 CDD ABC_SMC5_euk 23 180 - -
Lsi02g02546 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 294 IPR027417 -
Lsi02g02546 877 Coils Coil 622 698 - -
Lsi02g02546 877 Coils Coil 329 356 - -
Lsi02g02546 877 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 877 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lsi02g02546 877 Coils Coil 209 229 - -
Lsi02g02546 877 Pfam AAA domain 28 281 IPR038729 GO:0140664
Lsi02g02546 877 Coils Coil 401 428 - -
Lsi02g02546 877 Coils Coil 747 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02546 Lsi-Chr2:31920606 Lsi07g00099 Lsi-Chr7:1115093 5.38E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02546 K22803 - csv:101210248 1625.53