Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02575 ATGGAACCTGGAGAATCTGCGGCAAGGGTTATAAAAAACATGGGCCCCAATGCCTGTCAAATATGTGGAGACCATGTCGGGAAGACTGTCGAGGGTGAGCCATTTGTTGCCTGTGATGTTTGCACATTTCCTGTTTGCAGACCATGCTATGAGTACGAGAGAAAAGATGGAAATCAGTCTTGTCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGCCCTGCTGTTCTTGGTGATGAAGAGGCTGCTGAGCTTGATGATGATGATGATGCTATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATAGCGGAGCGAATGATGAGCTGGCAGGTTTCATATGGACAAGCACAAGATCTCCCGCCTCCGAATTACGACAAAGAAGTTTCTTTAAATCACATTCCCTTGCTCACTAATGGGCAGGAGGTTTCTGGAGAACTTTCAGCTGCATCACCCGAGCATCCTTTGATGGCATCTCCTGGACATCCTCGTGGGAAGCCGTTATATTCTCTTCCTTATGCAGCTGATATTAACCAATCACCCATTGCACAAGGCATGGACCCTACGAAAGAGTATAATTCATCAGGGCTAGGCAATGTGGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAACAGGAGAAGAATGCTGGACCAATGAGCATAGCTCATGCTACATCTGAAAGGGGAGGTGGAGATATTGATGCCTGCACAGATGTGCTTGTTGATGACTCCTTACTAAATGATGAAGCTCGCCAGCCTCTCTCGCGAAAGGTTTCTATTCCATCATCTAGGATAAACCCTTACAGAATGGTGATTGTTCTGCGGCTTGTAATTCTTTGTTTTTTCTTGCACTACCGAATCACGAATCCAGTACGCAATGCATATGCTCTATGGCTGATATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTAAATCGCGAGACATATCTAGATCGGCTTGCATTAAGATATGATAGGGAAGGGGAACCATCACAGCTTGCTGCTGTTGACATTTTCGTGAGTACAGTTGACCCGCTGAAGGAGCCTCCACTTGTCACAGCCAACACCGTACTATCTATTCTTGCTGTTGACTACCCGGTTGACAAGGTCTCATGCTATGTTTCTGATGATGGAGCTGCCATGTTGACATTCGAAGCATTATCCGAGACATCAGAGTTTGCAAGATCATGGGTGCCTTTCTGCAAGAAATACAGCATCGAGCCTCGGGCTCCAGAATGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCGATCCATCATTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATACGAGGAATTTAAGGTCCGCATCAACGGTTTGGTATCAAAGGCACAGAAGGTTCCTGAAGAAGGATGGGTCATGCAAGATGGAACTCCATGGCCCGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTTCTAGGCCAAAACGGTGGACTGGATTCTGATGGTAATGAGTTACCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCCGGTGCAATGAATGCTCTTGTTCGAGTGTCTGCTGTTCTTACCAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAATAGCAAGGCATTGAGGGAAGCAATGTGTTTCATGATGGATCCAAACCTTGGCAAATACGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGACAGGAACGATCGATATGCCAACCGTAATACCGTGTTCTTTGATATAAATTTAAGAGGTTTAGATGGCCTTCAAGGTCCAGTTTATGTGGGCACTGGATGTGTCTTCAACAGAACTGCACTGTACGGTTATGAACCTCCTCACAAACCAAAGCAGCGAAAAACAGGATTTCTGTCTTCACTCTGTGGCGGATCTCGAAAGAAGAATTCAAAATCAAGTAAAAAAAGTCCAGACAAGAAGAAATCAAGTAGGCACGTGGACCCGACAGTGCCGATTTTCAATCTCGACGACATTGAAGAAGTGGTTGAAGGTGCTGGATTTGATGATGAGAAGTCCTTGCTTATGTCGCAAATGACCCTGGAGCAAAGGTTTGGCCAGTCTTCTGTTTTTGTTGCCTCAACCCTTATGGAAAACGGTGGCGTTCCTCAATCCGCAACACCTGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAAGACAAAACGGACTGGGGATCTGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATTCTTACCGGATTCAAGATGCATGCTCGTGGTTGGCGGTCAATTTATTGTATGCCACAACGTCCTGCCTTTAAAGGGTCTGCGCCTATTAATCTTTCAGATCGATTAAACCAAGTGCTTCGATGGGCCCTCGGCTCGGTGGAGATTCTTTTAAGTAGGCATTGCCCGATCTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAAAGATTCGCATATGTGAACACTACGATCTATCCGATCACTGCAGTTCCTCTTCTCATGTATTGTACCTTACCAGCCGTGTGTCTGCTGACGAACAAGTTCATTATTCCCCAGATTAGTAACATTGCAAGTATATGGTTTATAGCCCTCTTTCTCTCCATCTTCGCAACGGGCATTCTCGAGATGAGATGGAGTGGGGTCGGGATTGACGAGTGGTGGAGAAACGAACAATTTTGGGTCATTGGAGGTGTTTCAGCTCACTTGTTTGCTGTTTTCCAAGGTCTCCTCAAGGTTCTTGCTGGTATCGACACCAACTTTACGGTCACATCCAAGGCGTCTGACGAAGACGGAGACTATACTGAGCTTTACATGTTCAAATGGACGACTCTTCTCATCCCACCAACTACACTCCTCATCGTAAACTTGGTCGGGGTCGTTGCGGGAATATCTTACGCAATCAACAGCGGATACCAATCATGGGGACCGTTGTTTGGCAAGCTATTTTTCGCTTTTTGGGTGATCATTCATTTGTATCCATTCTTGAAAGGTTTGATGGGTCGCCAAAATAGAACACCCACCATTGTCGTTGTGTGGTCGATTTTGCTTGCTTCCATCTTCTCGTTGTTATGGGTGAGGATCGATCCGTTCACTACAACAGTCATAGGGCCCGATGTCGAGGAGTGTGGAATCAACTGCTAG 3249 44.94 MEPGESAARVIKNMGPNACQICGDHVGKTVEGEPFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEEAAELDDDDDAIDLNYISESQKQKQKIAERMMSWQVSYGQAQDLPPPNYDKEVSLNHIPLLTNGQEVSGELSAASPEHPLMASPGHPRGKPLYSLPYAADINQSPIAQGMDPTKEYNSSGLGNVAWKERVDGWKMKQEKNAGPMSIAHATSERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCFFLHYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVDPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPHKPKQRKTGFLSSLCGGSRKKNSKSSKKSPDKKKSSRHVDPTVPIFNLDDIEEVVEGAGFDDEKSLLMSQMTLEQRFGQSSVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFIALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDYTELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVIGPDVEECGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32203362 32210236 + Lsi02G025750.1 Lsi02g02575 657317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02575 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 904 IPR029044 -
Lsi02g02575 1082 PANTHER CELLULOSE SYNTHASE 7 1082 - -
Lsi02g02575 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 1082 - -
Lsi02g02575 1082 Pfam Cellulose synthase 354 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lsi02g02575 1082 Pfam Zinc-binding RING-finger 11 83 IPR027934 -
Lsi02g02575 1082 SUPERFAMILY RING/U-box 7 89 - -
Lsi02g02575 1082 MobiDBLite consensus disorder prediction 647 688 - -
Lsi02g02575 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 495 645 IPR029044 -
Lsi02g02575 1082 CDD mRING-HC-C4C4_CesA_plant 19 67 - -
Lsi02g02575 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01851 Lsi-Chr1:19884600 Lsi02g02575 Lsi-Chr2:32203362 0 dispersed
Lsi02g02575 Lsi-Chr2:32203362 Lsi04g02141 Lsi-Chr4:28528236 0 dispersed
Lsi11g01314 Lsi-Chr11:21776026 Lsi02g02575 Lsi-Chr2:32203362 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02575 K10999 - csv:101206590 2132.45