Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02578 ATGGATTGTAAGCATCCAAAGACGGCTGAAGAGTTACTTCGAGTAACTCCTTCGAAGTTTGCTAGCCCGGGTTATAGCACAGAAACTCTTCAATCCAATGATCGAACAGGAAGAGATGGAAAGTTGAAGAGAAGAGGGCCTCCTCAATCTTCAAACAATGAGAATCAGAATCCCAATTCTTCAACGCGTCAAAGCCACACAGTCAAAGCCGCTAAGGAAGAGATCAAATCAAGCGCTGAGAAGAAGCCATTGATGGATGATGGGCAACAGAAGAACAATGGGGCACCATCCCTGAAAAGCACACTTTCAGCAAGGAACTTATTTGCAGGGCGAGATATTCTAAACCAAATTACAGAGTTTTGTAATGAGATAAAGAGAATGGCGATTAGAGTAAGGGAGAGAGAGAATGTTAAGCAATCAGCTGTGGAGAATGGTGTTGAGGGTGAGAAGAAATGTGTAGAGAAGAAGGAGGTTCCATCGAAGGATTTGAATAATCTGGAAAGGAAGGAGAAAGAGAGGAAGCCATTTGGTGAACTTAGTATAGAGAAATCTGATGGATCAATCAGTAATAGTGTAAAGCAGAAGAAAAGGATCAATATCAAAACTGCGGCAAACAGCGAAAACGTCCTGATCCCTCTGGACTTGGAGAAAGTATGGCACAAAAGAGAGGACAATGTGCTGCAAATCCGAACCAATCCACCATCTCCCCAATGCTTTTCCAATGCACGTGCACCGTATAAAATCCCTGCTTCAAAAGCTTCGAGATCTAGACTAAAGGAGAAGGAAATCACTGTAGAAGTGGAGGAGGTAAAGGAGGTAACAAAAGTGGTTTCTGCTGAGAGAGTTAAAACCATTTCTTCTGCTGTTGGTGAAAAAGAAGGAAGAGCATTGGATGACCCACCACACAACATGTGCAATGCACGTGCCTGTCCTCCTAAGTCCTACCAGCTCCTCCATCATCCTCGAGGTTTGTTATTTCCTATCTGTGAAATGGCTATGGCTGGGCGTCTGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACCGACTCAGAGACCTGCTCTTCTACGAGCCCTACTTTGCCCCACGACTGCCAACTCCGAGGTCTCGAGGAACTATGCAACTGCTTCCAAGAAAAGCGAGGAAAAAGTTAAAGTTCCTCTGGCTTTGTTTGGGGGTTCTGGAAACTATGCCTCTGCTTTGTACCTTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGAAAGAGCTTCTTGACCTTGTCGAGGCTTCACAGAGAAGTGCCACCTTCTCTCAGTTCACAAGAGATGTTTCAGTGCCTAAAGATACTAGGGTCAAGGCTATTGAAGATATTTGTGCTGCAGCTAAATTTTCAGAAGTTGTAAAGAACTTTTTGGTTGTATTGGCTGAGAATGGAAGGCTGAAATACATAGACAGCATTGCGAAGAGGTTTCTAGAGTTAACAATGGCTCATAGAGGAGAGGTGAAAGCCATTGTGACTACAGTTATTCCCCTCCCTCCTGAAGAAGAGAAAGAACTAAAGGAGACCTTGCAGGATATTATTGGACAAGGGAAAAAGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGACTAGTTGTAGAATTTAGCGAGAAAGTGTTCGACATGTCGATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCAAACCTTGACAGCCGTTGA 1740 44.02 MDCKHPKTAEELLRVTPSKFASPGYSTETLQSNDRTGRDGKLKRRGPPQSSNNENQNPNSSTRQSHTVKAAKEEIKSSAEKKPLMDDGQQKNNGAPSLKSTLSARNLFAGRDILNQITEFCNEIKRMAIRVRERENVKQSAVENGVEGEKKCVEKKEVPSKDLNNLERKEKERKPFGELSIEKSDGSISNSVKQKKRINIKTAANSENVLIPLDLEKVWHKREDNVLQIRTNPPSPQCFSNARAPYKIPASKASRSRLKEKEITVEVEEVKEVTKVVSAERVKTISSAVGEKEGRALDDPPHNMCNARACPPKSYQLLHHPRGLLFPICEMAMAGRLRSIIPQFNQLLKSESPTQRPALLRALLCPTTANSEVSRNYATASKKSEEKVKVPLALFGGSGNYASALYLAAVKANSLDKVEKELLDLVEASQRSATFSQFTRDVSVPKDTRVKAIEDICAAAKFSEVVKNFLVVLAENGRLKYIDSIAKRFLELTMAHRGEVKAIVTTVIPLPPEEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFSEKVFDMSIKTRARQMERFLREPANLDSR 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32238544 32245713 - Lsi02G025780.1 Lsi02g02578 657320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02578 579 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 365 572 - -
Lsi02g02578 579 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 532 551 IPR020781 GO:0015986|GO:0016020|GO:0046933
Lsi02g02578 579 MobiDBLite consensus disorder prediction 67 87 - -
Lsi02g02578 579 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 400 569 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 Pfam ATP synthase delta (OSCP) subunit 399 568 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 Hamap ATP synthase subunit delta [atpD]. 393 572 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 PANTHER ATP SYNTHASE DELTA CHAIN 365 572 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 398 499 IPR026015 -
Lsi02g02578 579 MobiDBLite consensus disorder prediction 46 66 - -
Lsi02g02578 579 PRINTS ATP synthase delta subunit signature 467 478 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 PRINTS ATP synthase delta subunit signature 478 492 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 PRINTS ATP synthase delta subunit signature 530 545 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 PRINTS ATP synthase delta subunit signature 397 416 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 PRINTS ATP synthase delta subunit signature 545 563 IPR000711 GO:0015986|GO:0046933
Lsi02g02578 579 MobiDBLite consensus disorder prediction 1 98 - -
Lsi02g02578 579 Gene3D - 397 490 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00237 Lsi-Chr8:5218543 Lsi02g02578 Lsi-Chr2:32238544 2.76E-07 transposed
Lsi02g02578 Lsi-Chr2:32238544 Lsi03g01210 Lsi-Chr3:22634209 6.25E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02578 K02137 - cmo:103499920 429.483