Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02581 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTCTCTGCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCGTCCTCTTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCAGCCCTCATCCTCCACCACCACTTGCAGTTTTGATGACGAATCTGTCACTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCCGGCACCGGGAAAATCCTCGACGGAGACATATCCGACCACCCTTTGCCGATCTCCGGTAAGGGTCAATTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCACAATACAGGAAAGGCCCAGAATCACTAAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCTCGGTCGCGACCGCTCAAGGATTTTCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAAGCCTTTGGTCGTGGCCACGGTGCTCTCGGTCTTGACTACTTTGACGACGACAATGAACCCTCTCCTGAACTCGAACACCAACCACAACATGGCCTCCTCGTCCATCTCCATTAA 921 51.79 MTDPNYSNSFNFIPLPSSLPPSNFPFSQCRRPLPPPPPPPPSSPPQALPLLNTLSPETADQPSSSTTTCSFDDESVTLALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPSPELEHQPQHGLLVHLH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32280466 32283863 + Lsi02G025810.1 Lsi02g02581 657323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02581 306 Gene3D Classic Zinc Finger 139 162 - -
Lsi02g02581 306 SUPERFAMILY beta-beta-alpha zinc fingers 133 162 IPR036236 -
Lsi02g02581 306 MobiDBLite consensus disorder prediction 27 47 - -
Lsi02g02581 306 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Lsi02g02581 306 Pfam Zinc finger, C2H2 type 140 159 IPR013087 -
Lsi02g02581 306 SMART c2h2final6 140 162 IPR013087 -
Lsi02g02581 306 SMART c2h2final6 224 244 IPR013087 -
Lsi02g02581 306 PANTHER ZINC FINGER PROTEIN WIP2 40 296 IPR043584 GO:0003700|GO:0010468
Lsi02g02581 306 Gene3D Classic Zinc Finger 202 275 - -
Lsi02g02581 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Lsi02g02581 306 MobiDBLite consensus disorder prediction 48 70 - -
Lsi02g02581 306 MobiDBLite consensus disorder prediction 23 70 - -
Lsi02g02581 306 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 40 296 - -
Lsi02g02581 306 SUPERFAMILY beta-beta-alpha zinc fingers 207 244 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02581 Lsi-Chr2:32280466 Lsi03g00054 Lsi-Chr3:850153 2.49E-21 dispersed
Lsi01g01928 Lsi-Chr1:24228033 Lsi02g02581 Lsi-Chr2:32280466 8.07E-108 transposed
Lsi03g00110 Lsi-Chr3:1578744 Lsi02g02581 Lsi-Chr2:32280466 3.93E-98 transposed
Lsi03g01705 Lsi-Chr3:28423079 Lsi02g02581 Lsi-Chr2:32280466 2.04E-107 transposed
Lsi09g01027 Lsi-Chr9:14756298 Lsi02g02581 Lsi-Chr2:32280466 2.85E-95 transposed
Lsi10g01052 Lsi-Chr10:14750518 Lsi02g02581 Lsi-Chr2:32280466 1.06E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24911 PF00096 zf-C2H2 0.0016 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02581 - - bhj:120085421 521.931