Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02612 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTTGAGAAGCAACCGCAAGTACAGCCGCCGCAGCGAGGTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTATCGATTGGCCGTCCGGTAGTCGGAGAGAAAGAAGACGACGAAGACAAATATAATCAGAGAGAAGATGAATCCGACGGTAATGAGGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGACCGGACCGCATCGCCGAATAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGTCGGAGGAAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAATGAACGAAGTGGGTGAATCTGAAAGAGCGTCTTCAAGAGCTAGCGATGAAGAAGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAGCAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAAACAACAAACTCATTCTACATGCAATTGCCAGCCACAACACTCACCATGTGTCCGTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCAACCGTCGCCGCCAGTGGAAGCAAATCGACGGAGGGAGTTGCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 993 48.94 MELGLSLGDAPKPFRFVEKQPQVQPPQRGLSRPDLGFCVDLSIGRPVVGEKEDDEDKYNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGVGGNISCRRDQMENGVMNEVGESERASSRASDEEENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAASGSKSTEGVAKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32506859 32508096 - Lsi02G026120.1 Lsi02g02612 657354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02612 330 CDD homeodomain 166 223 IPR001356 GO:0003677
Lsi02g02612 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 302 - -
Lsi02g02612 330 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Lsi02g02612 330 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Lsi02g02612 330 MobiDBLite consensus disorder prediction 46 68 - -
Lsi02g02612 330 MobiDBLite consensus disorder prediction 308 330 - -
Lsi02g02612 330 PANTHER - 1 302 - -
Lsi02g02612 330 MobiDBLite consensus disorder prediction 288 330 - -
Lsi02g02612 330 Coils Coil 228 258 - -
Lsi02g02612 330 MobiDBLite consensus disorder prediction 1 115 - -
Lsi02g02612 330 Gene3D - 170 220 - -
Lsi02g02612 330 SMART HOX_1 164 226 IPR001356 GO:0003677
Lsi02g02612 330 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Lsi02g02612 330 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Lsi02g02612 330 MobiDBLite consensus disorder prediction 145 166 - -
Lsi02g02612 330 SUPERFAMILY Homeodomain-like 160 223 IPR009057 -
Lsi02g02612 330 MobiDBLite consensus disorder prediction 151 166 - -
Lsi02g02612 330 Pfam Homeodomain 166 220 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00857 Lsi-Chr1:6862407 Lsi02g02612 Lsi-Chr2:32506859 2.38E-74 dispersed
Lsi02g02612 Lsi-Chr2:32506859 Lsi07g01279 Lsi-Chr7:18633125 1.31E-72 dispersed
Lsi04g01165 Lsi-Chr4:16901349 Lsi02g02612 Lsi-Chr2:32506859 4.46E-34 transposed
Lsi09g00640 Lsi-Chr9:7091257 Lsi02g02612 Lsi-Chr2:32506859 1.07E-11 transposed
Lsi02g02612 Lsi-Chr2:32506859 Lsi03g01235 Lsi-Chr3:22919024 1.52E-09 wgd
Lsi02g02612 Lsi-Chr2:32506859 Lsi03g01746 Lsi-Chr3:28845899 1.72E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24915 PF00046 Homeodomain 2.30E-15 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02612 K09338 - csv:101221600 563.533