Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02634 ATGGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGAAGGTCAAGTTACAGAAATTAAAGGCAAAAATGCTACCATACTCACTACCAATGGAAAAACTAAATTTCGCATTGAATATGATGATCAACATCGGCTTCGATTTCAGATTGTTGCAGAAATTTCGAGTATATATCCGAAAGACACGGAGGCGCCGCCGGCGGGGGTTGACGACATGACGAAATTGGCGTATCTTCATGAACCTGGAGTTCTGCATAACCTAGCTTGTCGGTTTTCTCTCAATGAGATATACACTTACACCGGGAATATTCTGATTGCGGTAAACCCTTTCCGGAGACTGCCCCATTTGTATGATATTCACATGATGGAACAGTATAAAGGAGCTCCTTTCGGCGAGCTTAGTCCACATCTTTTCGCTGTTGCAGATGCTTGCTATAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATATTAGTGAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGGTCAGACACTGAAGGAAGAACAGTTGAACAACAGGTTTTGGAGTCCAACCCTGTACTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTTGAACGGTCGCGTGTTTGCCAAGTCTCAGACCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCAGCACCACCAGAAGATGTCAAGAAATTCAAGTTAGGAGACCCAAGGACATTTCGTTATCTTAATCAGACAAATTGTTATGAAGTGGCGAATGTTGATGATTCAAGAGAGTACTTAGAGACGAGAAATGCCATGGATGTTGTTGGAATCAGCCAGGATGAACAGGATGCTATATTTCGTGTTGTAGCTGCTATACTGCATCTTGGAAACATTGACTTCATGAAAGGGAAGGAAGTTGACTCCTCCAAAGTGAAAGACGAGAAGTCAAATTACCACCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTAAAGTCACTGGAACATTCGCTCTGCCAGCGTGTCATAGTGACTCCAGATGGCAACATTACGAAGCCCTTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGTCAAGATCCTAATGCAGCCAGCTTAATTGGCGTTCTTGATATTTATGGTTTTGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACGAAAGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAGGACGTCCTTGATCTTATTGAAAAGAAACCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTAGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTGAATGCCTCGCAATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAGAGCTCAAAGCAATCCAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACGGAACCACATTATATCAGATGTGTAAAGCCCAACACAGTTTTGAAGCCGGGAATCTTTGAGAACTTCAACGTGTTGAACCAGTTGAGGTGTGGGGGAGTGCTTGAGGCAATTAGAATAAGTTGTGCAGGATATCCAACAAAAAGAACGTTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGATGGGTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGGTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATATTGGCCAATGCTGTCAGACTCATCCAGAGGCAAATCCGAACCCATCTAACTAGAAAAGAGTTCATTGCCCTGAGGAAAGCTACAATTCATATGCAGAAACTTTGGAGAGGGCAACTTGCTCGTAAGCTGTATGAGCAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACACAAAATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAATGAGTACAGACACAGAAGAAGAACTAAGGCAGCTATCATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGAAGGAGCTTAGAAAATTAAAGATGGCTGCAAGAGAAACAGGAGCACTCAAGGAAGCCAAGGACAAATTGGAGAAGCGTGTTGAGGAGCTAACATGGCGCCTAGAGTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCTAAGGGGCAAGAGGTTGCAAAATTACAAAATACTTTGGAAGAAATGCAAGGGCAGCTGGATGAAGCCAATGCTGCAATTATACGTGAGAGAGAAGCAGCAAAATTAGCCATAGAACAAGCTCCACCAGTCATTAAGGAAGTGCCTGTGGTAGACGAGACCAAGCTGGAAATGCTGAGAAATCATAATGAAGAACTTGAGGGTGAGGTTGGAGAGCTGAAGAAGAAAATTGAGGAATTCGAAGAAAAGTATGCTGAAGTGGAAAAGGAGAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCATTGCAACTTCGAGAGACTATTGAGAGGTTGGAATCAAATTTATCTAGCCTTGAATCTGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAGTCCCTTTCTGAAGAACTGCAAGCACTCAAGAGTAAGATTGGAAGTCTAGAGGCAGAGAATGAAGTTCTCCGCAACCGGACAGTGGCTGTTGAACATATAACTGTTCCCGCTGCAGGGCTTACAGAAAGCAAGACTTTAGATAATGGACATCTAATGGAAGAAGAGATTAAATCAACTAAGGAACCATCTACTGTTCCGATTAAATCAACTAAGGAACCATCTACTGTTCCCATCCTAGCTAAACAAGGCTCGCTTACAGAAAAGCAACAGGAAAACCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAGGGGAGACCAGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGACAAGACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGTGATCTTGCATATTGGCTTTCAACCACTTCCACCCTTCTCTATCTTCTTCAAAGTTCACTCAAGGCAACCAATACAAGTACTGTAGCTTCACATCGCAACCGAGCTTCTCCTGCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAGTGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCACTGCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAATTTGAAGAAAGAAATTAGTCCTTTCTTGCATCTATGTATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCTAATATTGTTGCAAAACAGCAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAAGCTAGACCAGACCTTGGATATAATGTCGGAAAACCATGTTCCCTCCATGATCATGAGAAAAATATTCTTTCAAGTTTTCTCATTCATAAATGTCCAGCTTTTCAATAGCTTGTTATTACGACGTGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTCCAGGAGTTGGAGCAATGGTGTAACAAAGCTACTGATACGTATGCTGGCTCGTCTTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACATCAGAAATCCCAGAAGAGTTTGAATGAGATCACAGATGAATTGTGCCCGATTCTGAGCATTCCACAAATATATCGCATAGGCACAATGTTCTGGGACGACAAGTATGGAACTCAGGGATTATCTCCTGATATAATTGGAAAAATGAGAGTCCTATTGGCCGAAGACTCCATAAATATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATGGAAGAAATATTCCGGTCCTTTGGCGAGGACGGTGGGGTTAACCTATCCGACGTTGACCCGCCACCACTTATAAGACAAAGATCAGATTTCCATTTTCTAGTGCAGCAACTGACTGAATGA 4752 42.0 MGTPVNIIVGSHVWVEDPEDAWIEGQVTEIKGKNATILTTNGKTKFRIEYDDQHRLRFQIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAPFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRTFRYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIDFMKGKEVDSSKVKDEKSNYHLQTAAELLMCDVKSLEHSLCQRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASQCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRLIQRQIRTHLTRKEFIALRKATIHMQKLWRGQLARKLYEQMRREAASIRIQKHARAHADRKSYTKLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRSKVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQNTLEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKIEEFEEKYAEVEKESKARLKEAEEAQLKSLQLRETIERLESNLSSLESENQVLRQQALVAADNESLSEELQALKSKIGSLEAENEVLRNRTVAVEHITVPAAGLTESKTLDNGHLMEEEIKSTKEPSTVPIKSTKEPSTVPILAKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEADKTNIFDRIIHTIRSSIESQENISDLAYWLSTTSTLLYLLQSSLKATNTSTVASHRNRASPATLFGRMAYGLRSSSVGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCNKATDTYAGSSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGKMRVLLAEDSINIPNNSFLLDVDSSIPFSMEEIFRSFGEDGGVNLSDVDPPPLIRQRSDFHFLVQQLTE 1583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32755926 32767094 - Lsi02G026340.1 Lsi02g02634 657376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02634 1583 Pfam DIL domain 1398 1501 IPR002710 -
Lsi02g02634 1583 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PANTHER MYOSIN 19 1576 - -
Lsi02g02634 1583 SMART MYSc_2a 71 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 Pfam Myosin head (motor domain) 79 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PRINTS Myosin heavy chain signature 164 189 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PRINTS Myosin heavy chain signature 211 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PRINTS Myosin heavy chain signature 497 525 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PRINTS Myosin heavy chain signature 107 126 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 PRINTS Myosin heavy chain signature 444 472 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 Gene3D Myosin VI head, motor domain, U50 subdomain 327 616 - -
Lsi02g02634 1583 PANTHER MYOSIN-12 19 1576 - -
Lsi02g02634 1583 CDD MyosinXI_CBD 1158 1545 IPR037975 GO:0007015
Lsi02g02634 1583 Gene3D Kinesin motor domain 80 677 IPR036961 -
Lsi02g02634 1583 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 796 818 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 867 889 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 844 866 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 771 793 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 819 841 IPR000048 GO:0005515
Lsi02g02634 1583 SMART iq_5 748 770 IPR000048 GO:0005515
Lsi02g02634 1583 ProSiteProfiles Dilute domain profile. 1207 1522 IPR002710 -
Lsi02g02634 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 897 IPR027417 -
Lsi02g02634 1583 Coils Coil 891 925 - -
Lsi02g02634 1583 ProSiteProfiles IQ motif profile. 749 776 IPR000048 GO:0005515
Lsi02g02634 1583 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Lsi02g02634 1583 Gene3D - 682 744 - -
Lsi02g02634 1583 Gene3D - 748 798 - -
Lsi02g02634 1583 Gene3D - 799 849 - -
Lsi02g02634 1583 Coils Coil 1070 1097 - -
Lsi02g02634 1583 CDD MYSc_Myo11 91 734 IPR036018 -
Lsi02g02634 1583 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Lsi02g02634 1583 Pfam IQ calmodulin-binding motif 773 792 IPR000048 GO:0005515
Lsi02g02634 1583 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Lsi02g02634 1583 Pfam IQ calmodulin-binding motif 752 769 IPR000048 GO:0005515
Lsi02g02634 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 800 IPR027417 -
Lsi02g02634 1583 ProSiteProfiles IQ motif profile. 868 897 IPR000048 GO:0005515
Lsi02g02634 1583 ProSiteProfiles Myosin motor domain profile. 77 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 Pfam Myosin N-terminal SH3-like domain 9 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi02g02634 1583 Gene3D - 267 325 - -
Lsi02g02634 1583 Coils Coil 987 1063 - -
Lsi02g02634 1583 Coils Coil 930 964 - -
Lsi02g02634 1583 Gene3D - 454 638 - -
Lsi02g02634 1583 ProSiteProfiles IQ motif profile. 797 823 IPR000048 GO:0005515
Lsi02g02634 1583 SMART DIL_2 1397 1504 IPR002710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02634 Lsi-Chr2:32755926 Lsi06g00306 Lsi-Chr6:3499595 0 dispersed
Lsi02g02634 Lsi-Chr2:32755926 Lsi09g01808 Lsi-Chr9:26861807 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02634 K10357 - csv:101207221 2948.69