Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02635 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCACATTCCCAATCATCTTCCACTCCACGATTACGTTTTCCAAAATCTGTCCAAATTCGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTACTCCTACCACGACGTTCAGCTAACGGCCCGTCGAGTCGCCGCCGGCTTACACAGCCTCGGAATTAAAAAGGGTGACGTCGTGATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGGCGCGTCGTACCGAGGCGCCATCATGACGGCGGCGAACCCTTTTTGCACAGCCGTGGAAATAGCCAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACGATGGCATGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTCAAAATCGTGTGCGTTGATTTTGCCGTTGAGGGCTGTTTTCATTTCTCTGTTTTAAGTGGGGCGGATGAATCCCACGCGCCGTCTGTGGAATTCTCCGCTGATGACGTGGTGGCGCTGCCGTACTCCTCCGGCACTACTGGTTTGCCGAAGGGAGTTATGTTGACTCATAAAGGGTTAATCACAAGCGTTGCTCAACAAATCGACGGCCAAAATCCAAACCTTTACTATCGTGGCGATGACGTCATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCGATTTTGCTGTGTGGGCTACGCGCCGGTGCTGCGATTATGATTATGCAGAAATTCGACATCGTTTCACTTTTACAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTGCCGCCGATCTTTCTGGCCATTGCTAAGTCGTCGGAATTTGAGAAATACGACGTGTCGTCCGTGAGGGTTCTAAAATCCGGCGGAGCGCCACTGGGGAAGGAGTTGGAAGACGCCGTGAGGGCGAAATTTCCGACGGCGATTCTCGGGCAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACAATGAGTTTGGCTTTTGCAAAAGAACCGTTTCAAGTGAAAGCCGGAGCATGTGGAACTGTGGTCCGAAATGCAGAGATGAAGATTGTTGACCCGGAAACCGGCGCCTCCTTGCCGGCGAATTCCGCCGGAGAGATTTGTATTAGAGGTGATCAAATTATGAAGGGGTATTTGAATGATTTGGAGTCTACGAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGGGACATCGGCCTCATCGACGACAACGACGAGCTCTTCATCATCGATCGACTTAAGGAACTTATCAAATTCAAGGCATTTCAAGTGGCACCCGCCGAGCTTGAGGCCCTTCTTATCACTCATCCTAAACTCTCGGACGCTGCTGTTATTGGTATGCCAGATGTGGAGGCAGGAGAAGTGCCGGTGGCATTTGTGATTAAGGAGAACGACGATGCAATAACAGAAGAAGATGTAAAACAATTCATAACAAAACAAGTGGTGTTCTACAAAAGGCTAAAACGTGTGTTTTTTGTCAACACTATTCCAAAGGCGCCGTCTGGCAAAATCTTGAGAAAAGAACTTAGGACAAAACTTGCTTCTAGTGCTTACAATTAA 1629 48.8 MAVESNQTNEFIFRSKLPDIHIPNHLPLHDYVFQNLSKFASRPCLINGATGDVYSYHDVQLTARRVAAGLHSLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFCTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCFHFSVLSGADESHAPSVEFSADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYRGDDVILCVLPFFHIYSLNSILLCGLRAGAAIMIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSSEFEKYDVSSVRVLKSGGAPLGKELEDAVRAKFPTAILGQGYGMTEAGPVLTMSLAFAKEPFQVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGLIDDNDELFIIDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVIKENDDAITEEDVKQFITKQVVFYKRLKRVFFVNTIPKAPSGKILRKELRTKLASSAYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32778201 32780191 - Lsi02G026350.1 Lsi02g02635 657377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02635 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Lsi02g02635 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Lsi02g02635 542 Gene3D - 437 539 IPR045851 -
Lsi02g02635 542 Pfam AMP-binding enzyme 35 442 IPR000873 -
Lsi02g02635 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
Lsi02g02635 542 Gene3D - 3 436 IPR042099 -
Lsi02g02635 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Lsi02g02635 542 CDD 4CL 22 532 - -
Lsi02g02635 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02635 Lsi-Chr2:32778201 Lsi02g02637 Lsi-Chr2:32793313 0 dispersed
Lsi02g02635 Lsi-Chr2:32778201 Lsi02g02636 Lsi-Chr2:32784508 9.45E-40 tandem
Lsi01g00080 Lsi-Chr1:787142 Lsi02g02635 Lsi-Chr2:32778201 1.51E-20 transposed
Lsi03g00010 Lsi-Chr3:165966 Lsi02g02635 Lsi-Chr2:32778201 1.23E-136 transposed
Lsi03g02006 Lsi-Chr3:31429769 Lsi02g02635 Lsi-Chr2:32778201 4.96E-126 transposed
Lsi09g00465 Lsi-Chr9:4864794 Lsi02g02635 Lsi-Chr2:32778201 1.80E-51 transposed
Lsi02g02635 Lsi-Chr2:32778201 Lsi03g01245 Lsi-Chr3:23048096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02635 K01904 - csv:101218121 996.882