Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02638 ATGAGAGATGATAGAATGGCCACCTCCTTGATTGGTGGTCTCATTCATCAACCTTTAGTGCCCAATTTCTCAATTAATTCCAACTTCCTCAACCTCTTTGTTTTGACCCTGCTTCTGGTTTTGCAATTCATTCCTCCTTTCTCTGTTTCAGCTTCTTGCAACCCATCTGATCGCGATTCTCTCTGGTATTTCGTCAATTCTTCATCTGCTGCTTCCCCGGTGGCTTTCAATTGGTCTTCTTCGATTGATTGTTGTTTCTGGGAAGGAGTCTTTTGTGAAGCCATCCCAAATAGCGACGACAACCGAGTTACCCAACTTTTGTTGCCTTCTAGAGGTCTTCGTGGTGAATTCCCTTCATCTCTCACAAACCTTACTTTTCTCTCTAACCTTGATCTCTCCCACAATCGTTTTAATGGCTCTCTCCCTTCTGATTTCTTTACGTCCCTAAGTCACCTCAAGGACCTGAATTTGAGCTACAACCTTCTCACCGGCCAGTTGCCACCGCCGCCGCCTTCATCGTCCGGACTCTTGATTGAGACTCTGGATTTGTCCAGCAATCGATTCTATGGGGAAATACCTGCCTCGTTAATCCAGCAAGTGGCAATTTCGGGGAGTTTGACCAGTTTCAATGTCAGCAACAATAGTTTTTCAGGTCTCATTCCAACCTCCTTTTGTGTTAATACTACATCCATAAGCTCCGTCCGGTTATTAGACTTTTCCAATAATGAATTCAAGGGTGGAATACCTCAGGGGCTAGGGAACTGCCCCAATTTGGAGGTTTTTCGAGCGAGTTTCAATAGTCTCACTGGTTCTATTCCCTCCGACCTATACAATGTTCTCACTCTAAAGGAGCTTTCTTTACATGTTAATCATCTTTCGGGGAACATCGGCGAGGGAATCGTTAATCTCACCAACCTCAGAATCCTGGAATTGTACTCCAATTCTTTGATTGGCCCCATCCCAACGGATATTGGAAAGCTCTCCAACCTGGAACAGATATCGCTTCACATTAACAATCTCACAGGCACTCTGCCCACATCACTGATGAATTGCACTAATCTTACTTTGTTGAATTTGCGGGTCAATAAGCTGCAAGGAGATCTCTCTAATCTTAATTTCTCTCGCCTCCTTGGCCTCACCACACTTGACCTGGGCAACAATATGTTCACAGGTAGTATACCATCGACTCTTTACTCCTGCAGATCTCTAAAGGCAGTTAGACTGGCTAGTAATCAGTTGTCTGGAGAGATCTCTAACGAAATTGCAGCGCTTCAATCACTGTCCTTCCTCTCAGTATCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAGTTTGATGGGTTGCAGAAACCTTGGAACTCTTGTTCTGTCCAGTAGTTATATTGGTGAAGCATTGCCGGATGAGGATATGATTGTAGATGCTAACACATTCCAAAATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTACCCTCATGGATACAAAAGCTCAGGAATCTAGAGGTCTTGGACCTGTCTTTTAATCGCCTTGTGGGTTCAATACCTGCATGGTTAGGTGATTTTCCGAGTCTGTTTTATGTTGACTTGTCTAATAATAGAATTTCCGGAGAATTCCCCACCCAGCTTTGCAGACTGCAGGCTTTGATGTCGCAGCAGATTTTAGATCCTGCCAAGCAGAGTTTTCTTGCATTGCCCGTCTTTGTTGCGCCCAGTAATGCTACCAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTGGGCAACAACACCATAAGTGGCCCTATTCCCTTGGAGATCGGGCAATTAAAGTTTATACATATATTAGACCTGAGTAACAACAGCTTCTCCGGCAGCATACCAGATACGATTTCCAATCTCAGCAACTTGGAGAGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCATTCCCTCAAAGGCCTCCATTTCTTGTCTTGGTTTAGCGTGGCCTTTAACGACCTTCAAGGACCAATACCATCGGGGGGTCAGTTTGATACCTTTCCTGGCTCTAGCTATGAAGGAAACCCAGGGTTGTGTGGTCCTCCTATAGTGCAGCGCTCTTGCTCTAACCAGACTAGAGTACCCCATTCCACCGCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGTACCTGTTTAGGTATTGCTCTCATCGTCACCCTCCTAGCGTTGTGGATATTATCCAAGAGGAGGATTGATCCAAGAGGGGATACCGACATAATGGATTTGGACATAATTTCAATTAGTTCTAATTACAATGCTGACAACAATACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGCGGTGGTTTTGGATTGGTTTACAAAGCAACATTAGCAAATGGGACGAGACTTGCTGTGAAGAAACTCTCGGGAGATTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTCTGTCTGCAGCCAAACACAAGAACCTGGTTACTCTTCAAGGTTACTGTGTGCATGAGGGCAGTCGGCTGCTAATGTATTCATACATGGAAAACGGAAGTTTAGATTACTGGTTGCATGAGAAGGATGACGGTGCATCTCAACTTGATTGGCCAACTCGGTTGAAGATTATACGAGGAGCAAGTTCTGGATTGGCCTACATGCACCAAATATGTGAGCCACATATTGTACACCGTGATATTAAGTCCAGTAACATCCTGCTCGATGAAAAATTTGAAGCTCATGTAGCAGATTTTGGACTTTCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGCACCTTAGGCTACATTCCTCCAGAGTATGGACAAGCATGGGTCGCCACTTTGAGAGGAGATATGTATAGCTTTGGTGTGGTCGTGCTCGAGTTGCTTACTGGCAAAAGACCTGTAGAGATATCAAAGCCAAAAGCATCACGAGAGTTGGTTGGCTGGGTGCAACAACTGAGAAATGAGGGCAAACAAGATGAAGTCTTTGACCCCATTTTGAGAGGGAAAGGCTTTCAAGAAGAGATGATTCAGGTTCTCGATGTTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTTGATTGGTTGAAAGATGTCGGCGCGACCAAAGTTCCCCAAAATAAGGATGTGTGA 3288 44.16 MRDDRMATSLIGGLIHQPLVPNFSINSNFLNLFVLTLLLVLQFIPPFSVSASCNPSDRDSLWYFVNSSSAASPVAFNWSSSIDCCFWEGVFCEAIPNSDDNRVTQLLLPSRGLRGEFPSSLTNLTFLSNLDLSHNRFNGSLPSDFFTSLSHLKDLNLSYNLLTGQLPPPPPSSSGLLIETLDLSSNRFYGEIPASLIQQVAISGSLTSFNVSNNSFSGLIPTSFCVNTTSISSVRLLDFSNNEFKGGIPQGLGNCPNLEVFRASFNSLTGSIPSDLYNVLTLKELSLHVNHLSGNIGEGIVNLTNLRILELYSNSLIGPIPTDIGKLSNLEQISLHINNLTGTLPTSLMNCTNLTLLNLRVNKLQGDLSNLNFSRLLGLTTLDLGNNMFTGSIPSTLYSCRSLKAVRLASNQLSGEISNEIAALQSLSFLSVSKNNLTNLSGALRSLMGCRNLGTLVLSSSYIGEALPDEDMIVDANTFQNIQALAIGASQLTGKVPSWIQKLRNLEVLDLSFNRLVGSIPAWLGDFPSLFYVDLSNNRISGEFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPHSLKGLHFLSWFSVAFNDLQGPIPSGGQFDTFPGSSYEGNPGLCGPPIVQRSCSNQTRVPHSTAQNKSSSKKLAIGLVVGTCLGIALIVTLLALWILSKRRIDPRGDTDIMDLDIISISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKDDGASQLDWPTRLKIIRGASSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILRGKGFQEEMIQVLDVACMCVSQNPFKRPTIKEVVDWLKDVGATKVPQNKDV 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32806286 32809573 - Lsi02G026380.1 Lsi02g02638 657380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02638 1095 Gene3D Ribonuclease Inhibitor 439 715 IPR032675 -
Lsi02g02638 1095 Gene3D Ribonuclease Inhibitor 54 201 IPR032675 -
Lsi02g02638 1095 Pfam Protein kinase domain 811 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02638 1095 ProSiteProfiles Protein kinase domain profile. 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02638 1095 SMART LRR_sd22_2 636 662 - -
Lsi02g02638 1095 SMART LRR_sd22_2 424 442 - -
Lsi02g02638 1095 SMART LRR_sd22_2 303 332 - -
Lsi02g02638 1095 SMART LRR_sd22_2 503 522 - -
Lsi02g02638 1095 SMART serkin_6 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02638 1095 SUPERFAMILY Protein kinase-like (PK-like) 793 1081 IPR011009 -
Lsi02g02638 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Lsi02g02638 1095 Gene3D Ribonuclease Inhibitor 202 299 IPR032675 -
Lsi02g02638 1095 Gene3D Ribonuclease Inhibitor 300 438 IPR032675 -
Lsi02g02638 1095 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Lsi02g02638 1095 PRINTS Leucine-rich repeat signature 636 649 - -
Lsi02g02638 1095 PRINTS Leucine-rich repeat signature 127 140 - -
Lsi02g02638 1095 PANTHER OS02G0155400 PROTEIN 36 1082 - -
Lsi02g02638 1095 ProSiteProfiles Leucine-rich repeat profile. 638 661 IPR001611 GO:0005515
Lsi02g02638 1095 Gene3D Transferase(Phosphotransferase) domain 1 886 1092 - -
Lsi02g02638 1095 Pfam Leucine rich repeat N-terminal domain 55 92 IPR013210 -
Lsi02g02638 1095 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Lsi02g02638 1095 Pfam Leucine rich repeat 127 188 IPR001611 GO:0005515
Lsi02g02638 1095 Pfam Leucine rich repeat 616 673 IPR001611 GO:0005515
Lsi02g02638 1095 Gene3D Phosphorylase Kinase; domain 1 771 885 - -
Lsi02g02638 1095 SMART LRR_typ_2 503 527 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 376 400 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 149 176 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 124 148 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 424 446 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 636 659 IPR003591 -
Lsi02g02638 1095 SMART LRR_typ_2 303 327 IPR003591 -
Lsi02g02638 1095 SUPERFAMILY L domain-like 491 703 - -
Lsi02g02638 1095 SUPERFAMILY L domain-like 229 561 - -
Lsi02g02638 1095 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 36 1082 - -
Lsi02g02638 1095 SUPERFAMILY L domain-like 52 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02183 Lsi-Chr2:28323883 Lsi02g02638 Lsi-Chr2:32806286 4.83E-09 dispersed
Lsi02g02638 Lsi-Chr2:32806286 Lsi05g00137 Lsi-Chr5:2036081 0 dispersed
Lsi02g02638 Lsi-Chr2:32806286 Lsi05g01804 Lsi-Chr5:25311429 4.10E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83435 PF00069 Pkinase 4.20E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02638 - - csv:101217884 1971.05