Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02647 ATGGCCAAGATCTCACATCCTTCGCACAACAATTCCATTTCCACCACTGCTAATCCTCACTCTTCTCCAGTCCTTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGACGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCACTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACCATTAACGTACCAAGACGAGCTTAAAGAAATGGAAAACCAATCAAGAGAAGAGTATATTGGATATCTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATATGCCACCCAAGAAGAAGCTGCCACAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATAAAATGCCTCCGTCCTGGGGAACAGGATATCCCAAACAATAATAACCGTCCACCAAACCCTAACGCCGGCGAAACTACATCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGCTCGATCTCCGGAAAACCTGCCACCGAGCCACTGCAGGAATCTGGCGACGGTGACTCCTCCTCGTCTTCCTCGGCTCTTGAGCTCCTACTCCATTCCTCAAAATTCAAAGATATAATCGAAAGAACATCCGCCGCCGAGGCTCCACAGACTCCACCGGAATCTGATCGGCCGCGCCGCTGTATTCCCGATGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGACATTGCCGAAGGCGACGACGGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1080 48.89 MAKISHPSHNNSISTTANPHSSPVLHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPPLTYQDELKEMENQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSISGKPATEPLQESGDGDSSSSSSALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDSGDIAEGDDGIFGYLNSFLPSSVFHCELDA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32891612 32898105 + Lsi02G026470.1 Lsi02g02647 657389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02647 359 MobiDBLite consensus disorder prediction 217 243 - -
Lsi02g02647 359 MobiDBLite consensus disorder prediction 220 243 - -
Lsi02g02647 359 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Lsi02g02647 359 Gene3D AP2/ERF domain 50 114 IPR036955 GO:0003700|GO:0006355
Lsi02g02647 359 MobiDBLite consensus disorder prediction 1 25 - -
Lsi02g02647 359 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Lsi02g02647 359 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 MobiDBLite consensus disorder prediction 1 51 - -
Lsi02g02647 359 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 342 - -
Lsi02g02647 359 MobiDBLite consensus disorder prediction 258 278 - -
Lsi02g02647 359 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 342 - -
Lsi02g02647 359 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 SUPERFAMILY DNA-binding domain 49 114 IPR016177 GO:0003677
Lsi02g02647 359 Pfam AP2 domain 49 105 IPR001471 GO:0003700|GO:0006355
Lsi02g02647 359 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02647 Lsi-Chr2:32891612 Lsi06g01084 Lsi-Chr6:21114522 1.59E-93 dispersed
Lsi08g00734 Lsi-Chr8:15688279 Lsi02g02647 Lsi-Chr2:32891612 2.09E-11 dispersed
Lsi09g00990 Lsi-Chr9:13446555 Lsi02g02647 Lsi-Chr2:32891612 2.76E-07 dispersed
Lsi11g00935 Lsi-Chr11:13539557 Lsi02g02647 Lsi-Chr2:32891612 1.79E-39 dispersed
Lsi02g02647 Lsi-Chr2:32891612 Lsi01g00869 Lsi-Chr1:7000981 7.42E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24917 PF00847 AP2 2.90E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02647 K09285 - csv:101206499 613.994