Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02647 | ATGGCCAAGATCTCACATCCTTCGCACAACAATTCCATTTCCACCACTGCTAATCCTCACTCTTCTCCAGTCCTTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGACGACAAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCACTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACCATTAACGTACCAAGACGAGCTTAAAGAAATGGAAAACCAATCAAGAGAAGAGTATATTGGATATCTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATATGCCACCCAAGAAGAAGCTGCCACAGCTTACGACAAAGCGGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATAAAATGCCTCCGTCCTGGGGAACAGGATATCCCAAACAATAATAACCGTCCACCAAACCCTAACGCCGGCGAAACTACATCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGCTCGATCTCCGGAAAACCTGCCACCGAGCCACTGCAGGAATCTGGCGACGGTGACTCCTCCTCGTCTTCCTCGGCTCTTGAGCTCCTACTCCATTCCTCAAAATTCAAAGATATAATCGAAAGAACATCCGCCGCCGAGGCTCCACAGACTCCACCGGAATCTGATCGGCCGCGCCGCTGTATTCCCGATGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGACATTGCCGAAGGCGACGACGGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA | 1080 | 48.89 | MAKISHPSHNNSISTTANPHSSPVLHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGTETVLNFPPLTYQDELKEMENQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNNNNRPPNPNAGETTSEFDPNSLLGFTFPSQCSISGKPATEPLQESGDGDSSSSSSALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDSGDIAEGDDGIFGYLNSFLPSSVFHCELDA | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32891612 | 32898105 | + | Lsi02G026470.1 | Lsi02g02647 | 657389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02647 | 359 | MobiDBLite | consensus disorder prediction | 217 | 243 | - | - | |
Lsi02g02647 | 359 | MobiDBLite | consensus disorder prediction | 220 | 243 | - | - | |
Lsi02g02647 | 359 | Gene3D | AP2/ERF domain | 148 | 209 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | Gene3D | AP2/ERF domain | 50 | 114 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lsi02g02647 | 359 | SMART | rav1_2 | 149 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | SMART | rav1_2 | 50 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | SUPERFAMILY | DNA-binding domain | 148 | 209 | IPR016177 | GO:0003677 | |
Lsi02g02647 | 359 | PRINTS | Ethylene responsive element binding protein signature | 189 | 209 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lsi02g02647 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 149 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 342 | - | - | |
Lsi02g02647 | 359 | MobiDBLite | consensus disorder prediction | 258 | 278 | - | - | |
Lsi02g02647 | 359 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 342 | - | - | |
Lsi02g02647 | 359 | CDD | AP2 | 148 | 209 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | SUPERFAMILY | DNA-binding domain | 49 | 114 | IPR016177 | GO:0003677 | |
Lsi02g02647 | 359 | Pfam | AP2 domain | 49 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02647 | 359 | Pfam | AP2 domain | 148 | 199 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02647 | Lsi-Chr2:32891612 | Lsi06g01084 | Lsi-Chr6:21114522 | 1.59E-93 | dispersed | |
Lsi08g00734 | Lsi-Chr8:15688279 | Lsi02g02647 | Lsi-Chr2:32891612 | 2.09E-11 | dispersed | |
Lsi09g00990 | Lsi-Chr9:13446555 | Lsi02g02647 | Lsi-Chr2:32891612 | 2.76E-07 | dispersed | |
Lsi11g00935 | Lsi-Chr11:13539557 | Lsi02g02647 | Lsi-Chr2:32891612 | 1.79E-39 | dispersed | |
Lsi02g02647 | Lsi-Chr2:32891612 | Lsi01g00869 | Lsi-Chr1:7000981 | 7.42E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24917 | PF00847 | AP2 | 2.90E-09 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02647 | K09285 | - | csv:101206499 | 613.994 |