Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02648 ATGATTGGCGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAATTCTTTGTATTTGAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTGATCCCTAGTACGAAGGATAAACAGGGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTTAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCACTTCGTCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCCGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGAAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGACCGGAAGTTGGCGGTGGCTCGCCATCGACGACGGAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAACCAATCCCAATCCAGTCGAAATCGCTTTTGGCTGTTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTAAAGAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGCTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCAGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGAGTGAGAGTTTTGGCCTTCTTGCAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCGAAGCTGTGTTGCTCAGTATGATCATATTTGGCTGCTTTTCAGCCCTCTTCTGCAGTTCAATCTCTGAACTAGCTTCCTGA 1305 44.98 MIGDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPSTKDKQGDENAVFCDKENAIPINGFCANSKQQFGDFKSFSTGKALKPSSLRLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKPIPIQSKSLLAVVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRVRVLAFLQISIDRLSSILHMPGFHRFEAVLLSMIIFGCFSALFCSSISELAS 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32900210 32903475 - Lsi02G026480.1 Lsi02g02648 657390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02648 434 MobiDBLite consensus disorder prediction 32 53 - -
Lsi02g02648 434 Gene3D Tubby Protein; Chain A 147 393 IPR025659 -
Lsi02g02648 434 Pfam Tub family 152 383 IPR000007 -
Lsi02g02648 434 SUPERFAMILY Tubby C-terminal domain-like 139 385 IPR025659 -
Lsi02g02648 434 PANTHER TUBBY-RELATED 1 388 - -
Lsi02g02648 434 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lsi02g02648 434 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Lsi02g02648 434 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Lsi02g02648 434 PANTHER TUBBY-LIKE PROTEIN 8 1 388 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24918 PF01167 Tub 4.60E-34 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02648 K19600 - csv:101216780 734.947