Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02660 ATGATTGTCACCGTGAAGAATTCGACTATGGTGACTCCGGCGGAGGAGACGCCGCACCAGAGCCTCTGGAATTCCAACGTCGATCTCCTATTGCCGAGTATGCACATGGCGAGCATCTACTTCTACCGACCTACCGGCGCCACCAATTTCTTCGACGCTGAGGTTCTCATGGAAGGCCTAAGCAAGTCGTTGGTTCCGTTTTATCCAATGGCCGGACGGTTGAGACATGATGAAGACGGTCGAATCGAGATCGACTGTAATGCCAAAGGTGTGCTTTTTGTCGAGGCTGAGTCCACGGCGGTTATCGACGATTTCGGTGATTTTGCGCCGACTTTGCAGTTCCAGCAGCTTATTCCGACCGTCGATTACTCCGGCGGAATCGAGTCGTATCCGTTACTGGTGTTACAAGTAACACACTTCAAATGCGGTGCCGTTTCGCTTGGCATTGGAATGCAGCACATGGTAGCGGACGGCTTCTCCGGTCCCCACTTTATCAACAGTTGGTCCGAAATGTCACGTGGCGTCGACCTCAAGGTCCGACCTTACATCGATCGAACCCTCCTCTATGCGCGGGACCCACCTCAACCGACCTTCCAACACGTTGAATATCAACCAGGCCCAACCATGAAAACTCCAGTCCAACCAAACTCGAACGAAACAACTGTCTCCATCTTCAAATTCACCCGAGAGCAACTTAATTTACTCAAAGCCAAATCTAAAGAAAGCGGCAACACCACCAACTACAGCTCCTATGAGATGCTCTCTGGCCACATATGGCGGTGCACGTGTAAGGCGCGCGACCTTCTAGCGGATCAAGACACTAAACTTTACTTCATCGTCAACGGTCGTGGCCGGTTGCGCCCACCACTCCCCAATGGCTACTTCGGCAATGCCATCTTTTTAGGGACATCGCTTGGCGTCGCCGGTGAACTAATGTCGAATCCAACGTGGTTCGCCGCAGGTAAGATCCACGACACCTTGATTCAAATGGACAATGATTATTTGAGATCGGCTTTGGACTATCTCGAGATTACACCTGGCATATTGCCATTGCTCAATGGTGTTCATCATCAGGAGTGCCCCAATGTGGGGATCACGAGTTGGGTTTGGCTGCCAATTTACGACGCCGATTTTGGGTGGGGACGACCGATTTTTATGGGCCCCGGTAGAATCGGATGTGAAGGATCGTTTTTTATAATTCCGAGTACTTCCGATGACGGGAGCTTGTCGGTGGTAATTTTGCTGCATAGTCGACATATGAAGGTGTTTAAGAAGCTGTTCTTTGATATTTGA 1293 50.58 MIVTVKNSTMVTPAEETPHQSLWNSNVDLLLPSMHMASIYFYRPTGATNFFDAEVLMEGLSKSLVPFYPMAGRLRHDEDGRIEIDCNAKGVLFVEAESTAVIDDFGDFAPTLQFQQLIPTVDYSGGIESYPLLVLQVTHFKCGAVSLGIGMQHMVADGFSGPHFINSWSEMSRGVDLKVRPYIDRTLLYARDPPQPTFQHVEYQPGPTMKTPVQPNSNETTVSIFKFTREQLNLLKAKSKESGNTTNYSSYEMLSGHIWRCTCKARDLLADQDTKLYFIVNGRGRLRPPLPNGYFGNAIFLGTSLGVAGELMSNPTWFAAGKIHDTLIQMDNDYLRSALDYLEITPGILPLLNGVHHQECPNVGITSWVWLPIYDADFGWGRPIFMGPGRIGCEGSFFIIPSTSDDGSLSVVILLHSRHMKVFKKLFFDI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33043556 33046854 - Lsi02G026600.1 Lsi02g02660 657402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02660 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 429 - -
Lsi02g02660 430 Pfam Transferase family 2 425 - -
Lsi02g02660 430 Gene3D - 209 430 IPR023213 -
Lsi02g02660 430 Gene3D - 1 205 IPR023213 -
Lsi02g02660 430 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02658 Lsi-Chr2:33007173 Lsi02g02660 Lsi-Chr2:33043556 2.37E-74 dispersed
Lsi02g02660 Lsi-Chr2:33043556 Lsi06g01658 Lsi-Chr6:26839428 2.99E-78 dispersed
Lsi02g02659 Lsi-Chr2:33025606 Lsi02g02660 Lsi-Chr2:33043556 0 tandem
Lsi02g02660 Lsi-Chr2:33043556 Lsi02g02661 Lsi-Chr2:33069688 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02660 K13065 - csv:101214857 707.212