Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02662 ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCATCAGATGACGGTGAGAATGAAAGACTTCGGTACGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTATCTAGATTTGGACACTTCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGTATGAATCATACATGGCTGGAGATGTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGTAGTGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCCTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGATGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTTATCCGAGTTGGACGTGTGAATGGAAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTGACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTTCTTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAGCTGGTCGACTACATTGGAGATCAACTAAAATCGGAAAGTAAACTCTCAGTTATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTCAACAACCCAAATGCTGCTTCTACTTCTGCTGAGGAGCTGCCGTCATCGTCCAATCAAACGTTGCCTGGTCCGAACGAAGGACCTTCTAAGACTGAATAG 1095 45.11 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAAYLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKYESYMAGDVGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVLACDGIWDCMSSQQLVDYIGDQLKSESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFNNPNAASTSAEELPSSSNQTLPGPNEGPSKTE 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33098364 33104187 + Lsi02G026620.1 Lsi02g02662 657404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02662 364 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Lsi02g02662 364 SMART PP2C_4 13 326 IPR001932 -
Lsi02g02662 364 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Lsi02g02662 364 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Lsi02g02662 364 Gene3D - 1 329 IPR036457 -
Lsi02g02662 364 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Lsi02g02662 364 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Lsi02g02662 364 CDD PP2Cc 23 328 IPR001932 -
Lsi02g02662 364 MobiDBLite consensus disorder prediction 335 364 - -
Lsi02g02662 364 Pfam Protein phosphatase 2C 157 313 IPR001932 -
Lsi02g02662 364 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Lsi02g02662 364 SMART PP2C_SIG_2 28 328 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02662 Lsi-Chr2:33098364 Lsi04g01346 Lsi-Chr4:21213825 0 dispersed
Lsi05g00113 Lsi-Chr5:1856944 Lsi02g02662 Lsi-Chr2:33098364 8.42E-28 dispersed
Lsi02g02662 Lsi-Chr2:33098364 Lsi03g00358 Lsi-Chr3:4227142 4.18E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02662 K17499 - csv:101214132 707.212