Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02662 | ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCATCAGATGACGGTGAGAATGAAAGACTTCGGTACGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTATCTAGATTTGGACACTTCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGTATGAATCATACATGGCTGGAGATGTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGTAGTGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCCTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGATGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTTATCCGAGTTGGACGTGTGAATGGAAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTGACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTTCTTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAGCTGGTCGACTACATTGGAGATCAACTAAAATCGGAAAGTAAACTCTCAGTTATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTCAACAACCCAAATGCTGCTTCTACTTCTGCTGAGGAGCTGCCGTCATCGTCCAATCAAACGTTGCCTGGTCCGAACGAAGGACCTTCTAAGACTGAATAG | 1095 | 45.11 | MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAAYLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKYESYMAGDVGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVLACDGIWDCMSSQQLVDYIGDQLKSESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFNNPNAASTSAEELPSSSNQTLPGPNEGPSKTE | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33098364 | 33104187 | + | Lsi02G026620.1 | Lsi02g02662 | 657404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02662 | 364 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 341 | IPR015655 | GO:0004722|GO:0006470 | |
Lsi02g02662 | 364 | SMART | PP2C_4 | 13 | 326 | IPR001932 | - | |
Lsi02g02662 | 364 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 328 | IPR001932 | - | |
Lsi02g02662 | 364 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
Lsi02g02662 | 364 | Gene3D | - | 1 | 329 | IPR036457 | - | |
Lsi02g02662 | 364 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 341 | - | - | |
Lsi02g02662 | 364 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - | |
Lsi02g02662 | 364 | CDD | PP2Cc | 23 | 328 | IPR001932 | - | |
Lsi02g02662 | 364 | MobiDBLite | consensus disorder prediction | 335 | 364 | - | - | |
Lsi02g02662 | 364 | Pfam | Protein phosphatase 2C | 157 | 313 | IPR001932 | - | |
Lsi02g02662 | 364 | Pfam | Protein phosphatase 2C | 23 | 104 | IPR001932 | - | |
Lsi02g02662 | 364 | SMART | PP2C_SIG_2 | 28 | 328 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02662 | Lsi-Chr2:33098364 | Lsi04g01346 | Lsi-Chr4:21213825 | 0 | dispersed | |
Lsi05g00113 | Lsi-Chr5:1856944 | Lsi02g02662 | Lsi-Chr2:33098364 | 8.42E-28 | dispersed | |
Lsi02g02662 | Lsi-Chr2:33098364 | Lsi03g00358 | Lsi-Chr3:4227142 | 4.18E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02662 | K17499 | - | csv:101214132 | 707.212 |