Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02668 | ATGCCGGTTGACGGTTCTTCAACTGCCACCTCCACCATATGCGTCACCGGCGCCGGCGGATTCATTGCCTCATGGATCGTCAAACTCCTCCTCCAGAAAGGCTATTTCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACAGCCATTTGAGAGAACTCGAAGGTGCGGCGGAGCGGCTCAGTTTGCATAAAGCGGATCTTCTCGATTTCGAAAGCCTTAGAGCGGCGATCGACGGCTGCGATGGCGTTTTCCATACGGCGTCACCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGAACGAAGAACGTCATTATCGCTGCGGCCGAAGCCAATGTCCGTCGCGTGGTGTTCACTTCCTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGACATCGTAGACGAGTCCTCTAAGACGTACGCCAATTCCGTTCAGGCATATGTACACGTGAAGGATGTGGCTCTAGCTCATATTCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTCTGCGCCGAGAGTGTGCTTCACAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGAAGAAGGCATACAACTTCTCCAACAAGAAGCTGAAGGATTTGGGATTGGAGTTCACTCCAACGAAGCTGTGTTTATACGACACTGTTAAGAGCCTACAAGAGAAAGGTCATCTTCCAATTCCTACTTCTACTCAACCAGCAGACTCCATTCGAATTCAATCTTGA | 789 | 52.22 | MPVDGSSTATSTICVTGAGGFIASWIVKLLLQKGYFVRGTVRNPEDPKNSHLRELEGAAERLSLHKADLLDFESLRAAIDGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESSKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKKKAYNFSNKKLKDLGLEFTPTKLCLYDTVKSLQEKGHLPIPTSTQPADSIRIQS | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33159675 | 33165425 | - | Lsi02G026680.1 | Lsi02g02668 | 657410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02668 | 262 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 11 | 146 | - | - | |
Lsi02g02668 | 262 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 147 | 251 | - | - | |
Lsi02g02668 | 262 | CDD | FR_SDR_e | 14 | 224 | - | - | |
Lsi02g02668 | 262 | Gene3D | - | 148 | 261 | - | - | |
Lsi02g02668 | 262 | Gene3D | - | 4 | 147 | - | - | |
Lsi02g02668 | 262 | Pfam | 3-beta hydroxysteroid dehydrogenase/isomerase family | 15 | 169 | IPR002225 | GO:0003854|GO:0006694|GO:0016616 | |
Lsi02g02668 | 262 | PANTHER | CINNAMOYL-COA REDUCTASE | 11 | 146 | - | - | |
Lsi02g02668 | 262 | PANTHER | CINNAMOYL-COA REDUCTASE | 147 | 251 | - | - | |
Lsi02g02668 | 262 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 10 | 241 | IPR036291 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02668 | Lsi-Chr2:33159675 | Lsi10g01070 | Lsi-Chr10:14926398 | 2.85E-19 | dispersed | |
Lsi04g00257 | Lsi-Chr4:2634977 | Lsi02g02668 | Lsi-Chr2:33159675 | 7.47E-23 | transposed | |
Lsi02g02668 | Lsi-Chr2:33159675 | Lsi03g01266 | Lsi-Chr3:23357447 | 1.46E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02668 | K09753 | - | csv:101213412 | 404.445 |