Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02668 ATGCCGGTTGACGGTTCTTCAACTGCCACCTCCACCATATGCGTCACCGGCGCCGGCGGATTCATTGCCTCATGGATCGTCAAACTCCTCCTCCAGAAAGGCTATTTCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACAGCCATTTGAGAGAACTCGAAGGTGCGGCGGAGCGGCTCAGTTTGCATAAAGCGGATCTTCTCGATTTCGAAAGCCTTAGAGCGGCGATCGACGGCTGCGATGGCGTTTTCCATACGGCGTCACCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGAACGAAGAACGTCATTATCGCTGCGGCCGAAGCCAATGTCCGTCGCGTGGTGTTCACTTCCTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGACATCGTAGACGAGTCCTCTAAGACGTACGCCAATTCCGTTCAGGCATATGTACACGTGAAGGATGTGGCTCTAGCTCATATTCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTCTGCGCCGAGAGTGTGCTTCACAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGAAGAAGGCATACAACTTCTCCAACAAGAAGCTGAAGGATTTGGGATTGGAGTTCACTCCAACGAAGCTGTGTTTATACGACACTGTTAAGAGCCTACAAGAGAAAGGTCATCTTCCAATTCCTACTTCTACTCAACCAGCAGACTCCATTCGAATTCAATCTTGA 789 52.22 MPVDGSSTATSTICVTGAGGFIASWIVKLLLQKGYFVRGTVRNPEDPKNSHLRELEGAAERLSLHKADLLDFESLRAAIDGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESSKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKKKAYNFSNKKLKDLGLEFTPTKLCLYDTVKSLQEKGHLPIPTSTQPADSIRIQS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33159675 33165425 - Lsi02G026680.1 Lsi02g02668 657410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02668 262 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 146 - -
Lsi02g02668 262 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 147 251 - -
Lsi02g02668 262 CDD FR_SDR_e 14 224 - -
Lsi02g02668 262 Gene3D - 148 261 - -
Lsi02g02668 262 Gene3D - 4 147 - -
Lsi02g02668 262 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 15 169 IPR002225 GO:0003854|GO:0006694|GO:0016616
Lsi02g02668 262 PANTHER CINNAMOYL-COA REDUCTASE 11 146 - -
Lsi02g02668 262 PANTHER CINNAMOYL-COA REDUCTASE 147 251 - -
Lsi02g02668 262 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 241 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02668 Lsi-Chr2:33159675 Lsi10g01070 Lsi-Chr10:14926398 2.85E-19 dispersed
Lsi04g00257 Lsi-Chr4:2634977 Lsi02g02668 Lsi-Chr2:33159675 7.47E-23 transposed
Lsi02g02668 Lsi-Chr2:33159675 Lsi03g01266 Lsi-Chr3:23357447 1.46E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02668 K09753 - csv:101213412 404.445