Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02675 ATGATCTCCTCCACCAAATTCTTACTTCTTAAACACCTGGCCACAAAGAAACAAGCTCCTTTTCAAGCTTCTTCTTCTTCTCCGACCGATCAATCCATGGCCCGACCTCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACGTTTGAAACGGCGGAGGATGCAGCACGAGCTTACGACGAGGCAGCACGGTTAATGTGCGGTCCAAAAGCCCGAACCAACTTCCAATACAATCCTAACGATCAACAGTCGTCGTCGTCGTCTTCTTCTTCTTCCAAGCTTCTCTCCGCCGCACTAATAGCGAAATTACATAAATGTCATTTAGCTTCACTCCAAATCGCCAAAAAACACGTCCACAAACAACACCCCGGATTCGAGCCCAACTACACTGCGTACGGCGGTTCACCTCCATCGAGCATTGCTGGAACCACCACTGGCCGATGGACGCCAGAAGATACGTGGGTGTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTAGACCTCGGATCATTCGAAATTATTACATAA 678 46.76 MISSTKFLLLKHLATKKQAPFQASSSSPTDQSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHVHKQHPGFEPNYTAYGGSPPSSIAGTTTGRWTPEDTWVYSDEGQMEMNNNNNNNNIHHHQQCLQPLEDDHIEQMIQELLDLGSFEIIT 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33219838 33223750 + Lsi02G026750.1 Lsi02g02675 657417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02675 225 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Lsi02g02675 225 MobiDBLite consensus disorder prediction 145 167 - -
Lsi02g02675 225 PANTHER ETHYLENE RESPONSE FACTOR 33 224 - -
Lsi02g02675 225 MobiDBLite consensus disorder prediction 19 38 - -
Lsi02g02675 225 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 224 - -
Lsi02g02675 225 MobiDBLite consensus disorder prediction 152 167 - -
Lsi02g02675 225 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Lsi02g02675 225 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Lsi02g02675 225 MobiDBLite consensus disorder prediction 19 41 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02675 Lsi07g00438 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02675 Lsi-Chr2:33219838 Lsi06g00969 Lsi-Chr6:19664746 3.30E-34 dispersed
Lsi07g00438 Lsi-Chr7:4672409 Lsi02g02675 Lsi-Chr2:33219838 1.81E-53 transposed
Lsi02g02675 Lsi-Chr2:33219838 Lsi04g02091 Lsi-Chr4:28094084 5.41E-67 wgd
Lsi02g02675 Lsi-Chr2:33219838 Lsi08g01234 Lsi-Chr8:20802008 2.93E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24920 PF00847 AP2 1.10E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02675 - - cmo:103499832 311.997