Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02676 ATGGGAGAGAGATTAGGAGGTTGTGCTATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCCACTCCTTCTTCCCAATAATTGATGCCAGACCACACCTTGCTGGGTTTTCAATTTCTAGTACAGTTTTTGCTTCTCACACACAACCCATCTCTCTCATTGTTGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCAGAGGTTAAAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTTCTTGGAGCTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACATCGAACCTTGATGATGAAAAATGTCAAAAGAATTTGGAGGCTTCGAAAGGGATGGCGCTAAATCCCATCATATCTAGATTTAACTCCTTGAGGTTGGCTAACTTTAAAGGTTCAGTTTCCACCATCGATTATAAACTGTTGGAAGCAGCAACTGATAACTTTAGCAAAAGCAATGTTTTGGGCGAAGGTGGTACAGGACATGTTTTCAAAGCTTGCTTCAATGATAAAATTATGGCAGCTGTGAAGAGAATAGAAAATGGAGGACCGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGTGTAAAATACGACATCAAAATGTAATCAAACTCTTGGGGCATTGCATTCATGGCGAGACACGGTTTCTCGTTTACGAGATGATGCAGAACGGATCTCTGGAGTCTCAGTTGCACGGACCATCACACGGATCGGCTTTAACTTGGCATATCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGCTTGGAATATCTTCATGAGCATCGAAATCCTCCTGTTGTTCATCGGGATTTAAAATCGTCGAATATTCTTCTAGATTCAGATTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCAGGAACTTTAGGTTATGTCGCCCCAGAATACCTTTTAAATGGTAAACTAACAGATAAAAGCGACGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAAAACCCGTCGAGAAGATGGGCCCTACTCAATCCCAATCTCTAGTTTCATGGGCAATACCGCAACTCAGCGACAGATCAAAGCTACCAAAAATTGTCGATCCCGTGATAAGGGACACAATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTTTTGTGTGTACAATCAGAACCAAGTTATCGACCATTAGTTACCGACGTTTTACATTCCCTTATCCCTCTCGTACCTGTAGAGCTTGGAGGATCTCTAAGAATTACAGAACCTCTGCATCCGAAAGTGCCTTCGTCAACCCGCTAA 1380 41.81 MGERLGGCAMNLLGILLPMWVFHSFFPIIDARPHLAGFSISSTVFASHTQPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIVSSTLLGAILLFLLCFWIYRRKTSNLDDEKCQKNLEASKGMALNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTGHVFKACFNDKIMAAVKRIENGGPDAEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLNGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTR 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33231910 33235024 - Lsi02G026760.1 Lsi02g02676 657418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02676 459 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524
Lsi02g02676 459 PANTHER BNAC02G46490D PROTEIN 12 451 - -
Lsi02g02676 459 SUPERFAMILY Protein kinase-like (PK-like) 140 432 IPR011009 -
Lsi02g02676 459 SMART serkin_6 163 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02676 459 Gene3D Transferase(Phosphotransferase) domain 1 239 437 - -
Lsi02g02676 459 Pfam Protein tyrosine and serine/threonine kinase 166 389 IPR001245 GO:0004672|GO:0006468
Lsi02g02676 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Lsi02g02676 459 Gene3D Phosphorylase Kinase; domain 1 127 238 - -
Lsi02g02676 459 ProSiteProfiles Protein kinase domain profile. 163 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02676 459 PANTHER OS01G0750732 PROTEIN 12 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02676 Lsi-Chr2:33231910 Lsi06g00150 Lsi-Chr6:1564114 3.01E-89 dispersed
Lsi10g00363 Lsi-Chr10:5624192 Lsi02g02676 Lsi-Chr2:33231910 2.96E-12 dispersed
Lsi02g02676 Lsi-Chr2:33231910 Lsi08g01231 Lsi-Chr8:20775365 2.08E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83440 PF07714 PK_Tyr_Ser-Thr 3.60E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02676 - - bhj:120085274 875.93