Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02718 ATGGAAGGTACTTCGCTTCACGGTACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAACGTCTTCAGCATGTTATTTGAGATACTAAATGGTACAATATGTAATGAGATTGTTACATTTTACATGTTAAAGCAAAACTTTGAGGAGGCTGTTGGAATTGGCAAAGGACAAACCAAACTATATGCGACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAAACTGAACCCTCTAATCCAAGATGGTATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGTGCAACTTTGATTGGACGTGCATATGTACCTGTGGAAGACATCTTAGATGGGGAGGAAGTTGACAGATGGGTTCCAATCTTAGATAAAGAGAAAAATCCAATTGAAGGAGAATCAAAGATTCATGTCAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAACTGGGGTCGTGGTATAAGAAGTCGTAAGTTTCCTGGAGTCCCCTATACATATTACTCACAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATATCCCCGATAATTTTATTCCTAAAATTCCTCTCGCTGGAGGAAAAAATTATGCTCCCGCCAGATGTTGGGAAGACATTTTTGATGCCATACAAAATGCCAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTAAGGGACTCAAGGAGGCCAAAGCCTGGAGGAGACACCATGCTTGGTGAACTGCTTAAGAAGAAAGCAAGTGAAGGGGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTAAAAAAAGATGGTCTGATGGCTACTCATGACGAAGAAACTGAACGCTACTTCCAAAATACTGATGTGCACTGTGTCTTGTGCCCTCGTAATCCCGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTTGTGGTGGATAGCCCAATGCCAAGTGGGGAGTCGGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCATTGATCTCTGTGATGGCAGGTATGACACGCCCTTTCACTCCCTTTTCCGGACATTGGATACTGCACATCATGACGATTTCCATCAACCAAATTTTGCTGGTGCATTAATAACAAAAGGTGGGCCGAGGGAACCTTGGCATGACATCCATTCCCGGCTTGAAGGACCCATTGCCTGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAACAAGGTGGGAAGGATGTACTTGTGCAGCTACGGGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGACGACCATGACACCTGGAATGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAGAGCTGGGCTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAGGACGCTTACATTAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATGATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGGGAGCTTTCCCTCAAGATCGTTAGTAAGATTTTAGCAGGAGAAAGGTTCACTGTCTATGTAGTTGTCCCAATGTGGCCAGAAGGTCTACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATCAAGGTAGCGAAGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGAGAAGTCAAGAGGTCTGGAGAATATGAACCTGTAGAAGCACCAGAGGACGATTCTGATTATTTGAGAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCGAATATCAACCAGAGATCCATGGACGGTGCAAGGGACTCTGAGATAGCTATGGGCGCTTATCAGCCATATCATCTGTCAGCCCGTGAACCTGCACGTGGTCAAGTTCACGGATTCCGTATGGCTCTATGGTATGAACATCTTGGTATGCTTGATGAATCTTTCCTTCGTCCAGAAAGTGAAGAATGTGCTGCAAAGGTTAACAGAATTGCTGATAAGTATTGGGATCTGTATTCAAGTGAATCACTCGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCAGTTGGCATATCCAGTGAAGGAGATGTCACAGAACTCCCAGGATTCGAGTTCTTCCCCGACACCAAAGCTCGTATACTTGGAACCAAATCCGACTACCTCCCTCCTATCCTCACAACCTAG 2481 43.85 MEGTSLHGTLHATIYEVDRLHTGGGSNVFSMLFEILNGTICNEIVTFYMLKQNFEEAVGIGKGQTKLYATIDLEKARVGRTRILETEPSNPRWYESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDILDGEEVDRWVPILDKEKNPIEGESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHIPDNFIPKIPLAGGKNYAPARCWEDIFDAIQNAKHMIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQNTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGESDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVQLRELDEIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHCIPRELSLKIVSKILAGERFTVYVVVPMWPEGLPESGSVQAILDWQRRTFEMMYKDVIQALRDQGSEEDPRNYLTFFCLGNREVKRSGEYEPVEAPEDDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAREPARGQVHGFRMALWYEHLGMLDESFLRPESEECAAKVNRIADKYWDLYSSESLERDLPGHLLRYPVGISSEGDVTELPGFEFFPDTKARILGTKSDYLPPILTT 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33509587 33514937 - Lsi02G027180.1 Lsi02g02718 657460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02718 826 SMART pld_4 344 382 IPR001736 GO:0003824
Lsi02g02718 826 SMART pld_4 672 699 IPR001736 GO:0003824
Lsi02g02718 826 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Lsi02g02718 826 Pfam Phospholipase D Active site motif 344 382 IPR001736 GO:0003824
Lsi02g02718 826 Pfam Phospholipase D Active site motif 673 699 IPR001736 GO:0003824
Lsi02g02718 826 Gene3D Endonuclease Chain A 218 460 - -
Lsi02g02718 826 CDD PLDc_pPLDalpha_2 510 719 - -
Lsi02g02718 826 SUPERFAMILY Phospholipase D/nuclease 169 458 - -
Lsi02g02718 826 PIRSF PLD_plant 1 826 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lsi02g02718 826 CDD C2_plant_PLD 6 166 - -
Lsi02g02718 826 Pfam Phospholipase D C terminal 744 816 IPR024632 -
Lsi02g02718 826 Gene3D C2 domain 48 175 IPR035892 -
Lsi02g02718 826 SMART C2_3c 49 142 IPR000008 -
Lsi02g02718 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 167 IPR035892 -
Lsi02g02718 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 672 699 IPR001736 GO:0003824
Lsi02g02718 826 SUPERFAMILY Phospholipase D/nuclease 462 756 - -
Lsi02g02718 826 Gene3D Endonuclease Chain A 498 716 - -
Lsi02g02718 826 PANTHER PHOSPHOLIPASE D 6 826 IPR015679 -
Lsi02g02718 826 PANTHER PHOSPHOLIPASE D 6 826 - -
Lsi02g02718 826 Pfam C2 domain 62 145 IPR000008 -
Lsi02g02718 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 344 382 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02718 Lsi07g00464 CCT
Lsi02g02718 Lsi07g00464 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02718 Lsi-Chr2:33509587 Lsi08g01204 Lsi-Chr8:20575171 0 dispersed
Lsi07g00563 Lsi-Chr7:5984985 Lsi02g02718 Lsi-Chr2:33509587 0 transposed
Lsi02g02718 Lsi-Chr2:33509587 Lsi07g00464 Lsi-Chr7:4922920 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02718 K01115 - csv:101206113 1593.17