Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02721 ATGGTTGGTGTTGGAGTCGTTGTTCCAATTATGAGGAAGAGAAGAGAAGAAGAGAATACTCTGCTGCTAAAACTTGAGGGTTTTCAAATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTCTGCTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTTGGACTTTTAGATGACTCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCCCCCTCTGTTTGTTCTATGTCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAATGCACCTCCTTCAATCTTCGAGAAGAGGCCGAATCTGAAACCTTGTATATCTGATGCGAAAAATGGCATGTATATAGCGGTGGGTTCTGGATATTCGACGTTGAATTCGGTATATATCGAAGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGCTAAAGTCTAAGAAACTCAAAGCTTCAAATGGTTTGGGTGTTGATACCTGCAGAGAAAATGGTGGGGGATCTAATGATCTGGCTGGGGAGATGTGTTGCGATGCGAGGGAGTCGTCGGTCGCCAATCCGTCGGGTGATCTATCGCCTACCGAACGTCAGGACTTAAAGAACAAAACCTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTGCAATATTTGGCGTCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGAGTTCTACACTGCACTCGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAAATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTAAATTCTGGTCAAGAGGGCATTCCCCGTCTCCGCTTTGTCGACCAGCACCTCAGGCAACAGAGAGCCCTTCAGCAGCTCGGTGTCACACCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCCGTGTCGATTCTTCGCGCTTGGCTATTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTAATGTCGTTAATCCTCAATCGAAAACTCGACTTTTTGCCCTCTAAACTCAAACGTCTGCTTGCAAATTTGAACGATATTCGTGTTGCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCGCTATTCTCCGAAGATAGGGGAGGAGACGAGTTGCACGACAGCACGAAATCTGCAGCAAATAACGGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCAAGTAACTTCTCAATGGGAGGAGGAGATGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAGTAACAATAGAATGAACAAAGATGAAAAATCAAACCCTAAGAATCGCATTGCCAACTACACTAAGCTAAGCACACTTTTTCAGTTATTAGTGGCGGAGCCATTGTTCTTTGGATTTTCCTCACTTCTTCTTCTTCCTTTTCCTATTTTCACTTCACTGCAATCTCGTCGCGAAGTGGGGGAGAGATGGCCGTTGATGATCTTAGCATTGGTTTCAATTTCCACGGCAATGGTTTTCTTCATGAGGACCTCGTTCGATTCCTGTAGTGGTAATGGGAATAGACGTTTTGTGGAAGAAAATGGTATCGACTCACAGATTCGTTCCTCCCAAATCGAGAGAAAAGCTCCGAATCCTCTTGATTTCATGAAGTCCAAGCTCGTCCTCTTGGTCTCACATGAGCTCTCTCTTTCTGGTGGGCCTCTACTACTCATGGAGCTTGCATTTTTGTTGAGAGGCGTCGGTACTCAAGTTGTATGGATTACTAATCAAAAGCCATCGGAGCCTGATGAAGTAGTGTACAGTTTGGAGCGCAAGATGTTGGATCGAGGAGTGCAGATTTTCATTCTCAAGGTTTTGTCTGCTAAGGGACAAGAAGCTGTTGAAACTGCTCTAAAAGCTCATTTGGTTGTTCTAAATACTGCTGTTGCCGGGAAATGGTTGGATGCTATCCTTAAGGAGAATGTTCCCCGTGTCCTTCCCAAGGTTCTGTGGTGGATTCATGAGATGCGGGGGAATTATTTCAAAGTTGAGTATGTGAAGCACCTCCCTTTTGTTGCAGGTGCCATGATTGATTCACATACAACTGCAGAATACTGGAAAAACAGAACACGGGAACGATTGGGGATTAAAATGCCTGAAACTTATGTCGTGCATCTTGGAAATAGTAAAGACCTTATGGAAGTGGCTGAAAATAATGTGGCCAAGAGGGTTCTTCGAGAGCATATTCGTGAGTCCCTTGGAGTTCGGAATGAAGATATATTGTTTGCAATTATAAATAGTGTTTCACGCGGGAAAGGTCAGGATTTATTTCTCCGAGCCTTTCATCAGAGCCTGCAAATGATCCAAGATAAAAAGCTGCGGGTACCAAGGATACATGCAGTGGTAGTTGGCAGTGACATGAGTGCTCAAACAAAGTTTGAAACAGAACTGCGCAACTTTGTAAATGAGAATAAAATTCAGGATCGTGTTCATTTTGTCAACAAAACCTTGTCTGTGGCTCCTTATCTAGCTTCTATTGATGTTCTTGTTCAAAACTCTCAGGGTAGGGGAGAATGCTTTGGAAGGATAACGATTGAAGCCATGGCGTTTCAGCTACCTGTGCTGGGCACGGCTGCTGGAGGAACAATGGAGATCGTAGTGAACGGGACGACGGGTTTGCTGCATCCTGCAGGGAAAGAAGGCGTAACTCCACTGGCACATAACATCGTAAAGTTAGCAACGCACGTCGAGCGAAGGCTAACCATTGGAAAGAAAGGATATGAGAGGGTGAGGCAAATGTTCCTGGAACAGCACATGGGGCAAAGAATTGCTTTTGTAGCAGGAAATTATGTCGCACAGATCTTGTCGGTGACGACGATCAATCTGAGGCCAAAAGAGCGAAGAACAACGTCCTTTCCTTGTGATTCGATTTTTTCAAATACGAAATCTCCGACCAGATCCGTTCTTGTGGACGGTGAGGAAGAAGGCTTTGCTGGATCTGAAATGTTTGTTGTCTCAGTGAAGCCATTTTTTAGCGTTCTTCTTGTCACTCTTTCTTTGTCCTTGGCGGTGCTGCTCTTGTCGCCGCCCTCTTTGCTTTTCTCCAACACTTCATTCTCATTTACTAATGAACGGGGCTCTGTCGCCTGTCGCTCCCCTTTACCTATCATTCCTCCACGGCGGTGGTCTGTTTTGCTTCTTTTTGTGAAATCGAACATATACCTACAGTTCCAGCTGAAAAACTTTGGAATAAGGCTACACGGATATATGGAGTGTTCGAAGGATAGTAGAGTGGAGGCCTTGCAAGTGGTGGCTTCAAGACTTTTTGTTGAAATGCTGCAGCTCTGCCCGCTGATAGCAATGGATATATACGCGTGGATTGCTATGTTGTGTGATGGAGTTGGCATAGCACGGCTGTTGAACGCAACCCTGGTTTTGCCAAAGTTTGAAGTGGCTGCATATTGGAATGAATCAAGTCAGATGAATGGTTATGTAAAAGTTGTCAAAATGTTACCCCCAGAGTTTGCGTCCAAAGAGCCATATCATGTGGATTGTAGCAAACGCAAAGGACAGTTTGACTATATTGAAAGTGTCCTTCCGTCCCTATTGGAACATCGTTATATTTCAATAACTCCAGCAATGAGCCAGAGAAGGGACAGGTATCCCCAGTATGCAAAAGCTGCCCTTTGTCAAGCTTGTTACAATGGTTTGCGCCTAGCTAAATCGGTGGAGGAGAAAGCCAAGGAGCTCCTAGAAGCCATACCAAAACCCTTTCTCTCACTTCATCTTCGTTTTGAGCCAGATATGGTGGCTTACAGCCAATGTGAATATAAAGGGCTTTCTCCTGCTTCCCTAGAAGCAATCGAAGCGACTCGGGGAGATAGAAAACCATGGACTGGAGAGTTGGCTGGAATATGGAGAAAGAGAGGGAAATGTCCTCTCACACCCCGTGAGACAGCCCTCATACTTCAAGCACTCCATATTCCAACTAACACAAACATTTACTTGGCTGCTGGTGATGGTTTGATGGAACTAGAAGGCTTTACATCAGTTTATACCAATGTAGTAACTAAGTCTAGTTTCCTCAGTAGCGACGATTTCTCAAGCATGCATGGGAACACAAAAGCTGCACTGGATTATTATGTGTCTATTAATAGTGACTCATATGTTGCCACATTCTTTGGAAATATGGACAAGATGGTTGCAGCAATGCGAGCGTTCAACGGAAAGCAGAGGACATTGTTTTTAAGTAGACGAGCTTTTGCAGATTTCACTTACAAGGGCTTGAAGGGGAAGGAGCTGAACCAAGCCTTGTGGAAGACTCATAGAGATGATTTTGCCATGGGGAGGGGATCCGCATTATCCGACTGTTTTTGTGAGTTCAAACTATAA 4779 44.67 MVGVGVVVPIMRKRREEENTLLLKLEGFQMTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGLLDDSNFQCQGVSLSLSTHSPSVCSMSSFPHQYQTPAMPSSFINAPPSIFEKRPNLKPCISDAKNGMYIAVGSGYSTLNSVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDTCRENGGGSNDLAGEMCCDARESSVANPSGDLSPTERQDLKNKTSKLLSLLGEVDRRYKQYYQQLQYLASSFDMVAGRGAAEFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALNSGQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVMSLILNRKLDFLPSKLKRLLANLNDIRVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKASWNNSLFSEDRGGDELHDSTKSAANNGERVLYRPCATDDMINSSNFSMGGGDVSLALELKHCEGDEFGMFGSNNRMNKDEKSNPKNRIANYTKLSTLFQLLVAEPLFFGFSSLLLLPFPIFTSLQSRREVGERWPLMILALVSISTAMVFFMRTSFDSCSGNGNRRFVEENGIDSQIRSSQIERKAPNPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPSEPDEVVYSLERKMLDRGVQIFILKVLSAKGQEAVETALKAHLVVLNTAVAGKWLDAILKENVPRVLPKVLWWIHEMRGNYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIKMPETYVVHLGNSKDLMEVAENNVAKRVLREHIRESLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIHAVVVGSDMSAQTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPAGKEGVTPLAHNIVKLATHVERRLTIGKKGYERVRQMFLEQHMGQRIAFVAGNYVAQILSVTTINLRPKERRTTSFPCDSIFSNTKSPTRSVLVDGEEEGFAGSEMFVVSVKPFFSVLLVTLSLSLAVLLLSPPSLLFSNTSFSFTNERGSVACRSPLPIIPPRRWSVLLLFVKSNIYLQFQLKNFGIRLHGYMECSKDSRVEALQVVASRLFVEMLQLCPLIAMDIYAWIAMLCDGVGIARLLNATLVLPKFEVAAYWNESSQMNGYVKVVKMLPPEFASKEPYHVDCSKRKGQFDYIESVLPSLLEHRYISITPAMSQRRDRYPQYAKAALCQACYNGLRLAKSVEEKAKELLEAIPKPFLSLHLRFEPDMVAYSQCEYKGLSPASLEAIEATRGDRKPWTGELAGIWRKRGKCPLTPRETALILQALHIPTNTNIYLAAGDGLMELEGFTSVYTNVVTKSSFLSSDDFSSMHGNTKAALDYYVSINSDSYVATFFGNMDKMVAAMRAFNGKQRTLFLSRRAFADFTYKGLKGKELNQALWKTHRDDFAMGRGSALSDCFCEFKL 1592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33526591 33540176 - Lsi02G027210.1 Lsi02g02721 657463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02721 1592 SUPERFAMILY Homeodomain-like 378 431 IPR009057 -
Lsi02g02721 1592 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 690 1072 - -
Lsi02g02721 1592 SMART HOX_1 377 469 IPR001356 GO:0003677
Lsi02g02721 1592 Pfam Associated with HOX 186 327 IPR006563 -
Lsi02g02721 1592 PANTHER GLYCOSYLTRANSFERASE 621 1076 - -
Lsi02g02721 1592 CDD GT4_PimA-like 717 1075 - -
Lsi02g02721 1592 PANTHER UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN 621 1076 - -
Lsi02g02721 1592 CDD homeodomain 377 466 IPR001356 GO:0003677
Lsi02g02721 1592 Pfam Glycosyl-transferase family 4 686 870 IPR041693 -
Lsi02g02721 1592 Pfam GDP-fucose protein O-fucosyltransferase 1259 1536 IPR019378 -
Lsi02g02721 1592 ProSiteProfiles 'Homeobox' domain profile. 374 465 IPR001356 GO:0003677
Lsi02g02721 1592 Gene3D Glycogen Phosphorylase B; 863 1063 - -
Lsi02g02721 1592 Coils Coil 190 213 - -
Lsi02g02721 1592 Pfam Homeobox KN domain 394 461 IPR008422 GO:0003677|GO:0006355
Lsi02g02721 1592 SMART prehox3 178 329 IPR006563 -
Lsi02g02721 1592 Pfam Glycosyl transferases group 1 876 1057 IPR001296 GO:0016757
Lsi02g02721 1592 Gene3D - 374 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02721 Lsi-Chr2:33526591 Lsi10g00402 Lsi-Chr10:6095589 2.77E-79 dispersed
Lsi07g00495 Lsi-Chr7:5203197 Lsi02g02721 Lsi-Chr2:33526591 2.24E-11 dispersed
Lsi02g02721 Lsi-Chr2:33526591 Lsi03g01817 Lsi-Chr3:29661765 5.81E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02721 - - csv:101222692 897.886