Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02739 ATGGCGACTAGCAATGAAATCATGTTTAATTGCTTTGTTTTGCTTTTGCTTCTGGCGTTTTCAAACGCTCAATCCAACGTATTAGTACAAGGCCAAGAACTAACACCTGAGTCTACGCTAATTTCGGCCGCAGAGACTTTTTCACTCGGGTTTTACAGTCCTAGCCTATTGAACAACAGTTACATAGCGATTTGGTACACCAGAGATTCACAGAACCCAGTGTGGATTGCCAATCGTAATTTTGCATTTCCCAGAGATTCTGGGACACCCTGTCTCACAATTGACAGCAATGGCAGCTTGAAGATTGTCCCTAAAGAAGGAAAAGGAAGAAATGGCTATAATTTCTATCTCTTTGAAGTTGAAGAACCCACCAACAGCAGCGCCATTCTTTTAGATAGTGGCAACTTTATATTGGGTGTGTTGAATCCAGATGGGTCAATTAAGCGACAGTTATGGCAGAGTTTTGATCATCCAACAGACACTCTTCTTCCTGGGATGAAACTTGGGATCAACCACAAAACTGGATCCACTTCGTCTATAACATCCCGAAGAGGTGACTATTCTGTTCTATCAGGATCTTTTACCCTCACAATGAATCCCAACAATACAAATCAGTTGCTGATATTACTTAGAGGAGCTGTTTTCTGGACCAGTGGAAACTGGCAGGACGGTCGATTTGAGTTCTCGAAAGAACTTTCCAACATTAACAATCAAGAATTCGTGTTTAGTCGATTTTCAAATGAGAACGAGACATTTTTCAATTACTCCACCTCCAATCTCTTTCAATTGCCTAACCAGAACAAGGGATTGATTGAAGTTCAAACCTTGTTGAGATTGGGCAATGATGGGAAATTGGTGGGCCGTAATTCGATTTCAGAAGTTGAATGTCCCTATTTTGAAAACGAGTTGTTTGAGCCTAAGAATGTTTCTGAAGGTGGGTGTGTGGGGAAAACGCAGCACAAAGTACCCGAATGCCGAAATCCACCAAAACAGTTTTCCACTTCACAGAGATTTGGAAACATGGAGGGAAGTGGTTTGAGGTTCAAAGAAAGTGAGAACCTGACTATTTATGATTGTGAAAAGAATTGCATTTCAAGCTGTGATTGCATTGCCTTTAGTTCTACAAACGAAGAAGGCACTGGCTGTGAGATGTGGAATGTGGGAGCAACGTTTATTCCAGTGGAGGGAGGCAAACAGATTATTTGGTCTCTTGAGGTGACTGAAGGGAAAGGTAAAGTAGTACTAGTTCCTGCAGGAGAAAAAAGGGTATGGTTGCAAGTTACTATCGGCATAATAGTACCTGTAACTTCTCTCCTATTGTCTTTTATTGTTTATTTCAAATGGAAAAGACAAATACGTGAAGGCCAACCCGTGATGGTTAGCCTAAGCTATGTTTTCACTTCTCAAGAGAGCAAAATGAGTTCGCTTTTGCAGGGAAGTTTGGCCGATGGCCAAGAAGTTGCCATTAAAAGACTGTCAAAGAATTCTGGACAAGGGCTAGAGGAGTTCAAGAATGAAGTCACACTGATTGCCAAACTGCAACACACTAATCTTGTTAGGCTTATTGGTTGCTGCATTCATAAAGAAGAGAGGTTATTAGTGTATGAGTACATGCCCAACAAAAGCCTTGACTCCTTCCTCTTTGTTGAATTTACAGATCCAGTTAGACAGCTAATTCTAGATTGGGAAAAACGCATGCACATAATCCAAGGGGTAATTCAAGGACTACTCTACCTTCACAACTACTCGAGACTACGAATAGTTCATCGAGATTTAAAAATTAGCAACATCTTGCTTGATGATGAGATGAATGCAAAAATATCAGATTTTGGCATGGCCAGAATCTTTAATCTCACAGAGGAAGAAGCAAGTACTAATCACATTGTTGGTACATTAACTTACCCAAAATGCAAACATTGCAGTGGTTATATAGCACCTGAAATTACGATGGGGGGCATTTTCTCACTAAAATCAGATGTTTACAGCTTTGGAGTGTTGTTATTAGAGATCATAACAGCTCAGAAAAATTACAACAATTATAATGTGGAACGACCTATGAATCTCACTGGATATGCATGGGAATTGTGGGTGAATGGTAGAGGAGAAGAATTGATTGATTCGACTTTGTGCAACTCTGATCAGAAACTAAAGGCTCTAAGATGCATCCATGTTAGTCTTCTATGCGTCCAACAAATACCAACAGATAGACCTACCATGCTTGATGTTTATTTCATGATTCAGAATGATTCTACTCAACTTCCATTGCCCAAACAACCTTCGTTTTTCATCACCCAGAACTCCAAACAGGAAGTGGTGACAGATGGCATTGAACTCAAATCAGAATCAACAACAGAAATATGTTCTGCAAATAGTATGACAGTTTCCATGATGGTTGCGAGATGA 2403 40.16 MATSNEIMFNCFVLLLLLAFSNAQSNVLVQGQELTPESTLISAAETFSLGFYSPSLLNNSYIAIWYTRDSQNPVWIANRNFAFPRDSGTPCLTIDSNGSLKIVPKEGKGRNGYNFYLFEVEEPTNSSAILLDSGNFILGVLNPDGSIKRQLWQSFDHPTDTLLPGMKLGINHKTGSTSSITSRRGDYSVLSGSFTLTMNPNNTNQLLILLRGAVFWTSGNWQDGRFEFSKELSNINNQEFVFSRFSNENETFFNYSTSNLFQLPNQNKGLIEVQTLLRLGNDGKLVGRNSISEVECPYFENELFEPKNVSEGGCVGKTQHKVPECRNPPKQFSTSQRFGNMEGSGLRFKESENLTIYDCEKNCISSCDCIAFSSTNEEGTGCEMWNVGATFIPVEGGKQIIWSLEVTEGKGKVVLVPAGEKRVWLQVTIGIIVPVTSLLLSFIVYFKWKRQIREGQPVMVSLSYVFTSQESKMSSLLQGSLADGQEVAIKRLSKNSGQGLEEFKNEVTLIAKLQHTNLVRLIGCCIHKEERLLVYEYMPNKSLDSFLFVEFTDPVRQLILDWEKRMHIIQGVIQGLLYLHNYSRLRIVHRDLKISNILLDDEMNAKISDFGMARIFNLTEEEASTNHIVGTLTYPKCKHCSGYIAPEITMGGIFSLKSDVYSFGVLLLEIITAQKNYNNYNVERPMNLTGYAWELWVNGRGEELIDSTLCNSDQKLKALRCIHVSLLCVQQIPTDRPTMLDVYFMIQNDSTQLPLPKQPSFFITQNSKQEVVTDGIELKSESTTEICSANSMTVSMMVAR 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33658190 33661996 + Lsi02G027390.1 Lsi02g02739 657481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02739 800 ProSiteProfiles Bulb-type lectin domain profile. 25 151 IPR001480 -
Lsi02g02739 800 SMART serkin_6 446 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02739 800 SMART blect_4 25 158 IPR001480 -
Lsi02g02739 800 SUPERFAMILY Protein kinase-like (PK-like) 482 767 IPR011009 -
Lsi02g02739 800 Gene3D Transferase(Phosphotransferase) domain 1 538 757 - -
Lsi02g02739 800 Pfam PAN-like domain 352 386 IPR003609 -
Lsi02g02739 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 587 599 IPR008271 GO:0004672|GO:0006468
Lsi02g02739 800 Pfam D-mannose binding lectin 73 184 IPR001480 -
Lsi02g02739 800 Gene3D - 18 156 IPR036426 -
Lsi02g02739 800 PIRSF SRK 473 800 IPR024171 GO:0004674
Lsi02g02739 800 PIRSF SRK 1 476 IPR024171 GO:0004674
Lsi02g02739 800 Gene3D Phosphorylase Kinase; domain 1 463 537 - -
Lsi02g02739 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 222 IPR036426 -
Lsi02g02739 800 Pfam Protein tyrosine and serine/threonine kinase 483 685 IPR001245 GO:0004672|GO:0006468
Lsi02g02739 800 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 774 - -
Lsi02g02739 800 ProSiteProfiles Protein kinase domain profile. 446 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02739 800 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 73 774 - -
Lsi02g02739 800 CDD B_lectin 25 158 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02739 Lsi-Chr2:33658190 Lsi02g02789 Lsi-Chr2:34134781 0 dispersed
Lsi02g02739 Lsi-Chr2:33658190 Lsi02g00676 Lsi-Chr2:6059594 2.59E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83441 PF07714 PK_Tyr_Ser-Thr 5.40E-39 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02739 - - csv:101221041 1291.95