Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02759 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGAGAATTCCCTGGTAGAGTTACGCGTGCTCGGGCCGCTGCATTTAGTGCGTCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCAACAGGAGACGCGTGTTGCACGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCATCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGACGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAAATGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCGTCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGTGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAAGCAAACATAAAATCAAAAGCTAAGTTGAAAGTTGAGCGTTCAAGTCATTCTGAAGACCCCGAGACCCATCATCGGGTAGGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGAGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAGGAGAAACCGTTGCTTCTGGGGACAAGAAGCAACCTGGACATTACAGATATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCTCAGGATATCTATAACAATTTACGTGTTGCTGAGCTAACCAGAAGACCACGTACCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGAAGTAACACCGGTGGTCCTTGTGCCCTCCAGGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATTACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTATCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGAACCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCCGAATTAACACTGGTTGACTATGGTTTCTTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAATCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATACAAAGCATCAGATCTGAAACAAACCGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGGTGTCCACTTAGTTCGATTCGCACCAAGTATCGGCAAGAAAAGTTCAAAGCCGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1410 42.84 MRKEENHIRANIGEFPGRVTRARAAAFSASAQLPPKVPAHQQETRVARANLKRAASEENSCHSIAKSSRPCKRRAVLQDVSNIGCEPSYSKCFNAAKIEPNSSKPTIRNRLKKSKGASSVGVANSKVPLGLRTKGASSVGVAYSKPLDLRTQGVQANIKSKAKLKVERSSHSEDPETHHRVGGIKEEVTSDFRDDNWRSQSPSESQNFQNKEKPLLLGTRSNLDITDIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRTNFMETVQTDITQSMRGILVDWLVEEVTPVVLVPSRKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKNPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRTKYRQEKFKAVATLSSPKLLDTLF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33845487 33852024 - Lsi02G027590.1 Lsi02g02759 657501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02759 469 Pfam Cyclin, N-terminal domain 244 284 IPR006671 -
Lsi02g02759 469 Pfam Cyclin, N-terminal domain 296 336 IPR006671 -
Lsi02g02759 469 SMART Cyclin_C_2 339 462 IPR004367 -
Lsi02g02759 469 SMART cyclin_7 243 330 IPR013763 -
Lsi02g02759 469 SMART cyclin_7 343 431 IPR013763 -
Lsi02g02759 469 Gene3D - 331 466 - -
Lsi02g02759 469 MobiDBLite consensus disorder prediction 160 213 - -
Lsi02g02759 469 MobiDBLite consensus disorder prediction 100 121 - -
Lsi02g02759 469 PANTHER CYCLIN-A2-4 294 469 - -
Lsi02g02759 469 PANTHER CYCLIN-A2-4 52 284 - -
Lsi02g02759 469 SUPERFAMILY Cyclin-like 234 336 IPR036915 -
Lsi02g02759 469 Gene3D - 258 284 - -
Lsi02g02759 469 MobiDBLite consensus disorder prediction 199 213 - -
Lsi02g02759 469 MobiDBLite consensus disorder prediction 161 198 - -
Lsi02g02759 469 CDD CYCLIN 339 426 IPR013763 -
Lsi02g02759 469 Pfam Cyclin, C-terminal domain 339 461 IPR004367 -
Lsi02g02759 469 Gene3D - 291 330 - -
Lsi02g02759 469 Gene3D - 244 257 - -
Lsi02g02759 469 SUPERFAMILY Cyclin-like 339 464 IPR036915 -
Lsi02g02759 469 PIRSF Cyclin_A_B_D_E 289 468 IPR039361 -
Lsi02g02759 469 PIRSF Cyclin_A_B_D_E 35 294 IPR039361 -
Lsi02g02759 469 PANTHER CYCLINS 294 469 IPR039361 -
Lsi02g02759 469 PANTHER CYCLINS 52 284 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02759 Lsi-Chr2:33845487 Lsi08g00456 Lsi-Chr8:12228253 1.12E-76 dispersed
Lsi02g02759 Lsi-Chr2:33845487 Lsi08g01152 Lsi-Chr8:20147136 5.75E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02759 K06627 - csv:101222299 809.29