Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02766 ATGCTGACGATTCCTTTTCCAGCCTCGGTCTTCTCCCAAAAACTCCATAATCTTTCAACTGTCTTTAATTCTAGGGTTCCGGCCGAAGAAGAGGTTGATTATGAGAGTGATCCGGAAGAAGCGAAGCGGTCACTGGCCATGCGGAGGCGGGAGGCGAGTGATGATGAGGAGGGTGAAGGAGAAGGGGGAGACGGGAGGAGGACGATCCGGAGGATGGGGATTCATTCGGATGATTCTGATGGTCAGGGTGGAGCTGCGGAATACGACGATGAGGAAGAATTGGGTGACGATGTAGATGAAGATGAGGTTGGTGAAGGAGTTGAGGACGTTGATGAGGGGGAGGAAGTTGACGAAGAGGAGGATGAGGAGAGGTATGGAGATAGGAAGTCGGGCGGTCATGGTGAATTGGATGCCGTCTCCGGCAATGCAGCGAAGGAACTGGACGAGGATGAAAGACCATTAGCAGAAGGACCAACTGATTTGCACGAGGAAAATTTAGAAGGGGAATTTGATCAGGAGAAGAAGGTGAATGAGCCCTTCGCTGTTCCCACTGCTGGGGCTTTCTATATGCATGATGATCGGTTTAGGGACAATGCAGGTGGTCGACACAGGAGAACACATGGTGGAAGGAGGTTGTGGGAGTCCAAGGATGACATGAAATGGGGGCATGACAAGTTTGAAGAAATGACTTTGCAAGAAAGGCATCGTGATGAGAGGAGAACCTCCAAGGGTCATCCACGAGGTCGGGGTAAAAGTCGAGGCATGGATCATGGTTATGCTCGAGGGAACAGATCTCGAGCATATAATAAAAATAACACTCAAAACAATGCTCCCAAAGTTGTGAGAGGAAGAGGACCTAGACGCTCATGGGTTCTTACTCATTTAGTATATGTCCATTTTGCGGATGACCTCAGATCTGTGAAGCCTCCTGAGAAGGCATCTCATAATAATACAGGGAGATCCCTTGCGCCCTCTCCAAACGTAGAAGGTGAGCCAATCTCTGTTAGGAAACATGCCTTTGCATCAAGCCTGAATTCTGCTTCTCCGCCTTTCTACCCTTCAGGGACGTCTAGTAAAAACATCCCTAAAGTGGAAAAAAGAGAAGTACAAGCTGGACTTCCTGAAAAGAATATGTATGATGATAATCGCTCTATGCCACAATCGAATGTAATGGTAGATGGAAAGCATGTAGTTGATGCTGTTGCCATGGAGAGGATTTACATAAATGATTCAACCAATCCATCTCTAGGAAATCCTTTATCTAAGCCAACTTCTGGTTCTTCAGTGATCAATAATGCTCAAATTCCCCAATCTAGACCTCATGGAAGGGGTGCTGTTGTAGGATCAACCGGCTACCATCCTGCATCACTCCATAGCCAAGTTAACAAGGTCTCTTTACCTACTCAATCACATGGTGTAGCACGAAATCCTGGTCAAACTCGGGGTCAATCTGCTGTTCAGGTTCCTGTCCAGCAGTTGGGTCAGCGACCTGGTAGTGGATCTCAGTCTTCATCTCCACCAAAAACTTCCACGTCAGTTAACTCACTTGAATCCGGAGAGGGTGATTCTTCTTCAGAATCAAGCAAATTGAAAACTGCTTTGGTTGGAAAGGGAAAGGGTGTGGCCCAGGGTATTGGTGCGGGTTCCTTTATTTATGGTGGGGCTCAGATTATGGGAACCTCTGGGAACATGAATATTACTCATGGAGACCAGAACTTTCCTCATACTCCAGCATTTTTGCCAGTTATGCAATTTGGAGGTCAGCATCCTGGTGGCATTGGAGTTCCTGCCGTTGGCATGGCATTTCCAGGATATGTTGCCCAGTCCCAACTTGGCATGGGAAATTCAGAAATGACATGGTTACCAGTTTTGGCTGGTGCAGCTGGGGCTCTGGGAGCTACATATTGTTCGCCTTATATAGCTATGGATGGGGCTTATCATGCTCGACCCTCAGGGCAGACATCATCTGCGGGAACGTTGAGGTTAATGGAAAAATATAGATTTGGCACAACTGATCTTTCTCCTTTGCAGAACTTGAAAGTGATGATGTTGGACAGCGACAAAATAAGCCACGCAGACCTCCTAACCCAGGAGGGAATGGAGATCAAAGAAAAGAAGAGAATTTCAAGTATCTCCTCTCCATTAATGTCATCTTCTTCGATGGCTATCCTCCTGGTTTTTCTCTGTTTCATCTTTAACGGTCCAAACGCCGCTTTTGCGGTCGGGCCGGGCGCTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGAGCAATCCAAGCAACTCTTAGATGCCAAGGATGATATCATAGCAACCGCTGCACCAGAGACGAAGGCACCGTCGCCGGTCGATTTGACAGCGAGAGTCTTCCTCCAAGAAGCTACTTACATCTTTCAGATGGCAGAGCCTGGATGGCATTGGGTGCGCCTACATTTCATGCCTGTTAAAAGCAATGACTTTGATCTCTTGCAGGCCAAATTTTCAGTAGCTACTGAAAAGTATGTGTTGCTTCACAGCTTCAACATTAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTGCTCAATATCACTGAACCAAAACTGTCAATCAAGTTCTTCCCTATGAGGAATTCAGCCGCTTTCATCAATGCCATTGAGGTTGTTTCAGCTCCGGTGAACTTGATCGCTGACTCGAATGTGGAGCTGTCTCCAGTCGGGACTATCGAGGGTCTGACAAAATATGCATTTCAGACATTGTATAGGTTAAACATGGGAGGACCTATAATCACTCCAAGAAATGACTCTCTTGGGAGGACATGGGAGACAGATGAAGTTTACAGGACACCCAAAGCAGCTGGTAGGAATGTGGTTGTTGAAACCAGCAGCATCAAATACCAAGGAGGAATGGAAAAAACAGGCATGTTAATTGCTCCTCCAAGTGTGTATGCAAGTGCAGTTCAAATGGGAGATGCTCAAGTTAGTGTACCAAATTTCAATATCACGTGGAAATTTGAGGCAGATCCCTCATTTGGGTACCTAATTCGATTCCATTTCTGTGACATTGTCAGCAAAGTACTCAATAATCTCTATTTCAATGTTTATGTAAATGGGAAAGCTGCCATAACCAACTTGGATTTGTCACACAAGCTAGGAAGTTTGGCAACTGCATACTACAAGGATGTTGTGGTTAATGCTTCTTTGATTGTAGATGGACTGACAGTTCAAATTAGTCCGGCTAATGTCGAAACCGGTGATGTGAATGCCATTCTAAATGGCGTAGAGGTATTGAAAATAAGCAATTCTGTTAATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAAGTCGGCAAATGGATCTAACCGTGGCACGGTCGCTGCCGTTGGGTTCGCGATGATGTTTGGGGCATTTGTCGGGCTCGGTGCCATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCCTGGTTGCTTCCTGTACATGCTGGTGACTCAAGCTTTATGACAAGCAAGACTTCATATGGATCACACAAGACCAACATTTACTCCTCTACTTTAGGCCTTGGTAGGTTCTTCACTTTGGCAGAACTGCAAGAAGCCACCAAGAACTTTGATCCCAATTCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACATTGGAGTTATTGATGAAGGGACCAACGTTGCAGTTAAGAGAGGAAATCCACAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAGATGCTTTCCAAACTCAGACACAGGCATTTGGTTTCTTTGATTGGATACTGTGATGAAAACGCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGCCCATTCAGAGATCACTTGTATGGAAAGGACGTATCTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATCGGAGCGGCTCGTGGTCTTCATTACCTTCACACAGGAACAGCACAGGGAATCATTCACCGTGATGTCAAAACAACTAACATTTTACTCGACGAAAACTTCACCGCAAAAGTCGCCGATTTTGGGCTGTCAAAGGATGCTCCAATGGGGCAAGGACATGTCAGTACTGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGGAGGCAACAGTTGACAGAAAAATCAGATGTTTATTCATTTGGAGTCGTTCTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCATCTTTGACAAGAGAACAAGTGAACTTGGCTGATTGGGCAATGCAGTGTAAGAAAAAAGGGTGTTTGGAAAAGATAATGGATCCCCTTCTAGTTGGAGCCATAAATCCTGAGTCCATGAAGAAGTTTGCAGAAGCAGCAGAGAAGTGTCTTGCTGAACATGGTGTAGATAGGCCAAGCATGGGGGATGTGTTGTGGAATTTGGAGTATGCATTACAACTTCAAGAAGCATTCTCACAAGGAAAAACTGAAGATGAAAACAAAGCTGCAGCCACGGCAACCGTCGCCCCTGCTACCCCTACTGCTGTCGATGCTTCGACAAATGCACCGAGCTCCGATAACCGCCCTGTCGTGCAGCCAGAACAGAATAGGCAACCGGCAGAGGTACAAGCCATTGATGATCACTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 4725 45.61 MLTIPFPASVFSQKLHNLSTVFNSRVPAEEEVDYESDPEEAKRSLAMRRREASDDEEGEGEGGDGRRTIRRMGIHSDDSDGQGGAAEYDDEEELGDDVDEDEVGEGVEDVDEGEEVDEEEDEERYGDRKSGGHGELDAVSGNAAKELDEDERPLAEGPTDLHEENLEGEFDQEKKVNEPFAVPTAGAFYMHDDRFRDNAGGRHRRTHGGRRLWESKDDMKWGHDKFEEMTLQERHRDERRTSKGHPRGRGKSRGMDHGYARGNRSRAYNKNNTQNNAPKVVRGRGPRRSWVLTHLVYVHFADDLRSVKPPEKASHNNTGRSLAPSPNVEGEPISVRKHAFASSLNSASPPFYPSGTSSKNIPKVEKREVQAGLPEKNMYDDNRSMPQSNVMVDGKHVVDAVAMERIYINDSTNPSLGNPLSKPTSGSSVINNAQIPQSRPHGRGAVVGSTGYHPASLHSQVNKVSLPTQSHGVARNPGQTRGQSAVQVPVQQLGQRPGSGSQSSSPPKTSTSVNSLESGEGDSSSESSKLKTALVGKGKGVAQGIGAGSFIYGGAQIMGTSGNMNITHGDQNFPHTPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVAQSQLGMGNSEMTWLPVLAGAAGALGATYCSPYIAMDGAYHARPSGQTSSAGTLRLMEKYRFGTTDLSPLQNLKVMMLDSDKISHADLLTQEGMEIKEKKRISSISSPLMSSSSMAILLVFLCFIFNGPNAAFAVGPGASFIPKDNFLIDCGANKELGALPDGRVFKTDEQSKQLLDAKDDIIATAAPETKAPSPVDLTARVFLQEATYIFQMAEPGWHWVRLHFMPVKSNDFDLLQAKFSVATEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFFPMRNSAAFINAIEVVSAPVNLIADSNVELSPVGTIEGLTKYAFQTLYRLNMGGPIITPRNDSLGRTWETDEVYRTPKAAGRNVVVETSSIKYQGGMEKTGMLIAPPSVYASAVQMGDAQVSVPNFNITWKFEADPSFGYLIRFHFCDIVSKVLNNLYFNVYVNGKAAITNLDLSHKLGSLATAYYKDVVVNASLIVDGLTVQISPANVETGDVNAILNGVEVLKISNSVNSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDPNSIIGVGGFGNVYIGVIDEGTNVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEFMSNGPFRDHLYGKDVSPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQCKKKGCLEKIMDPLLVGAINPESMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDENKAAATATVAPATPTAVDASTNAPSSDNRPVVQPEQNRQPAEVQAIDDHSGSAMFAHFSNLNGR 1574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33926792 33937856 - Lsi02G027660.1 Lsi02g02766 657508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02766 1574 SUPERFAMILY Protein kinase-like (PK-like) 1207 1490 IPR011009 -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 233 283 - -
Lsi02g02766 1574 Gene3D - 752 905 - -
Lsi02g02766 1574 Gene3D - 927 1113 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 1507 1558 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 233 260 - -
Lsi02g02766 1574 SMART serkin_6 1223 1495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02766 1574 SMART Btz_2 142 254 IPR018545 GO:0003729|GO:0006397|GO:0035145
Lsi02g02766 1574 ProSitePatterns Protein kinases ATP-binding region signature. 1229 1251 IPR017441 GO:0005524
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 345 360 - -
Lsi02g02766 1574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1343 1355 IPR008271 GO:0004672|GO:0006468
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 142 176 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 410 438 - -
Lsi02g02766 1574 Pfam CASC3/Barentsz eIF4AIII binding 158 251 IPR018545 GO:0003729|GO:0006397|GO:0035145
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 23 176 - -
Lsi02g02766 1574 ProSiteProfiles Protein kinase domain profile. 1223 1495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 410 455 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 307 330 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 1523 1550 - -
Lsi02g02766 1574 PANTHER BNAC03G60370D PROTEIN 737 1544 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 492 529 - -
Lsi02g02766 1574 Pfam Malectin-like domain 755 1110 IPR024788 -
Lsi02g02766 1574 Pfam Protein tyrosine and serine/threonine kinase 1228 1488 IPR001245 GO:0004672|GO:0006468
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 37 77 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 83 122 - -
Lsi02g02766 1574 CDD STKc_IRAK 1229 1493 - -
Lsi02g02766 1574 Gene3D Phosphorylase Kinase; domain 1 1184 1298 - -
Lsi02g02766 1574 PANTHER OS07G0166700 PROTEIN 737 1544 IPR045272 GO:0004714|GO:0006468
Lsi02g02766 1574 Gene3D Transferase(Phosphotransferase) domain 1 1299 1520 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 345 364 - -
Lsi02g02766 1574 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02766 Lsi-Chr2:33926792 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi02g02766 Lsi-Chr2:33926792 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83442 PF12819 Malectin_like 4.30E-36 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02766 - - csv:101220967 1640.17