Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02778 ATGGGAATCAATTCCAATCGAGTTGAAAATTTGGAATGTCGTGAAACGGTGTTGACAATTCCGGCGGAGGCAATGCCGGCGCCGCCTCAAGCGGAGGTGGAGATTCATAAAGTCTGCTTGCCTCCGAAGCAAACTACGTTTCAGAAACTCAAGCACAAGCTATCGGAGGTGTTCTTCCCTGATGACCCGTTTCATAGATTCAAGAACCAAACGTGGCTTAGAAAACTGCTTTTAGGCCTTCAATTTCTGTTCCCTGTTTTTCAGTGGGGTCCTGATTATACCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTCACAATTGCTAGCCTTGCTATTCCCCAGATTAGGCTGGGGTTTTGCCTTGATTCGACTGGTTTTTATTTAGGGAAATGTGGATTTTGTTTCATTCGTTTCGGAATAAGTTATGCGAAACTTGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCTATCCTTGGGAGCTCTAGGCATCTTGCTGTTGGGCCAGTATCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTATAATGAACACCCAACTCTGTATCTTAAGTTGGCTTTTACTGCCACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTAGTTGGATTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTGTCCATTTCACCACCAAAATGCAATTTATTCCTGTCATGTCTTCTGTTTTTCACCGCAAAGATGAGAATCTTGATTTGTATTGCATAGTTGAAGATATCTTTCAAGGGTTCAATTTTAATATTCTAGATGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTACTGTTTCTTCTGGGAACAAGGCATATAGTAAGTGGAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCAGCAGCTCCACTGACATCAGTTATTTTGTCCACTATTTTAGTCTTCTTGCTCAGAGCAAAATTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTGTCAATCCTCCATCTCTGAACATGCTGTACTTTACTGGTCCGCAATTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACTGAAGGAATTGCTGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGTAATAAGGAAATGATGGCTATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTACAATGCCGGGGCACAAACAGCAGTTTCAAATGTTGTGATGTCTGCAGCTGTGCTCATAACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGATTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAGCTCGATTTTGTAGCTTGTGTTTGTTCTTTCTTTGGCGTTCTTTTCATCTCAGTTCCATTGGGTCTTGCCATTGCATCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGGACTCATATATTCCAAAACCTTGATCGATACCGAGATGCCTCAAGGGTGCCTTCATTTCTCATTCTTGCCATTGAATCTCCAATCTACTTCGCAAATTCAACATACCTACAAGAAAGGTGAGCTCGACATAGTAAAAATCTTCTGTATATCTTGTGGACAAGTCTCCTGGAGCAATCATATTCTCGAAAGAGAGATCATTTTACCTATAACACATTCGTATGTCCTGTGCAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGATAAAATCGACTAACGATAGCCCACTGAAATGTGTAATCCTAGACATGACAGCCAGTATAAAAGAAGCCTCTTTTTTTAGATTATCCTGCCCAAACGGATTCACTCACGCTTGTCATATGGTTTTCTCAGCTGTGACATCCATAGATACAAGTGGTATAGAAACCGTCTGCGAGATTAGAAAGATGTTGATGCAAAAATCATTGCAGTTTGTGCTAGCAAATCCTGGTGGAAATGTGATGGAAAAACTGTATAAATCAAAGGCGTTGGAGCAATTCGAGTTCAACGGTCTCTACCTCTCAGTTGGAGAAGCTGTGAAGGACATTTCTTCTTTATGGAAGAGGCTGCCATAA 2313 41.37 MGINSNRVENLECRETVLTIPAEAMPAPPQAEVEIHKVCLPPKQTTFQKLKHKLSEVFFPDDPFHRFKNQTWLRKLLLGLQFLFPVFQWGPDYTLALFKSDIVSGLTIASLAIPQIRLGFCLDSTGFYLGKCGFCFIRFGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEHPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTTKMQFIPVMSSVFHRKDENLDLYCIVEDIFQGFNFNILDVVLANYCFRLHFPTVSSGNKAYSKWSIKKPKLFWISAAAPLTSVILSTILVFLLRAKFPGISVIGHLPKGVNPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGVLFISVPLGLAIASLFSRFFCMSPGQTPWFWGIFLGLIYSKTLIDTEMPQGCLHFSFLPLNLQSTSQIQHTYKKGELDIVKIFCISCGQVSWSNHILEREIILPITHSYVLCRILRWVREEEERIKSTNDSPLKCVILDMTASIKEASFFRLSCPNGFTHACHMVFSAVTSIDTSGIETVCEIRKMLMQKSLQFVLANPGGNVMEKLYKSKALEQFEFNGLYLSVGEAVKDISSLWKRLP 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34041681 34045973 + Lsi02G027780.1 Lsi02g02778 657520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02778 770 ProSitePatterns SLC26A transporters signature. 151 172 IPR018045 GO:0008271|GO:0008272
Lsi02g02778 770 SUPERFAMILY SpoIIaa-like 693 760 IPR036513 -
Lsi02g02778 770 Pfam STAS domain 696 758 IPR002645 -
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 3.4-RELATED 696 768 IPR030317 -
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 3.4-RELATED 28 547 IPR030317 -
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 3.4-RELATED 638 672 IPR030317 -
Lsi02g02778 770 Pfam Sulfate permease family 137 525 IPR011547 GO:0016021
Lsi02g02778 770 Gene3D STAS domain 630 765 IPR036513 -
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 696 768 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 28 547 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02778 770 PANTHER SULFATE TRANSPORTER 638 672 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02778 770 TIGRFAM sulP: sulfate permease 134 758 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi02g02778 770 ProSiteProfiles STAS domain profile. 696 762 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02778 Lsi-Chr2:34041681 Lsi09g00959 Lsi-Chr9:12534076 0 dispersed
Lsi11g00133 Lsi-Chr11:1475689 Lsi02g02778 Lsi-Chr2:34041681 0 dispersed
Lsi02g02778 Lsi-Chr2:34041681 Lsi06g00888 Lsi-Chr6:18485412 5.56E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02778 K17471 - zju:107405210 874.774