Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02787 ATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAATTTTTTGACTTTGAAACCATAGTTTCTGCTACAAATAATTTTGGAGATGAATGTAAGCTGGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATCTTGACGGATGGGCAAGAAGTAGCCATTAAAAGATTGTCAAAGAATTCAGGACAAGGATTGGTGGAGTTTAAGAATGAAACTATTTTGATTGCCAAACTTCAACACACCAATTTGGTTAGGCTTATTGGTTGTTGCCTTCATAAAGATGAGAAATTGCTTGTTTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAATATTAGATTGGGAAAAACGTTTGCACATCATCCAAGGGATAGTTCAAGGACTACTCTACCTTCACTACTACTCAAGAGTACGAATAATTCATCGAGATTTAAAAGTTAGCAACATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTCGGTATGGCTAGAGTGTTTAAGCCGTCGGAGCACGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTCTCAATAAAGTCGGACGTGTATAGCTTTGGAATACTATTATTGGAGATCGTAACAAGTCGGAAAAACTACAACAATTATGACACGGAACGACCATTGAATTTGATAGGATATGCATGGGAATTGTGGGTAAATGGAAGAGGAGAAGAGCTGATTGAAATGGGATTGTACAAGAATTGCGATGAGAAAGCAAAGGGAGGTATAATTAGGTGCATTCATGTGAGTCTTTTGTGTGTACAACAAATCCCAGGGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGAATCAACTCAACTTCCATCTCCCAAACAACCTGCCTTTTTTGTTGCTCAAAATCCAACTTCCTCAGAACCACAACCGGTGGATAATACTGATAGTGGGCTCATCATACAACCACCTGCACAACCAACCTTGCAAATTTGTTCGTTGAATACTATGTCACTCTCAGTCATGGTTGCTAGGTGA 1098 38.52 MIRQIRDGKKNPELQFFDFETIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCLHKDEKLLVYEYMPNKSLDFFLFDSEKKLILDWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIEMGLYKNCDEKAKGGIIRCIHVSLLCVQQIPGDRPTMLDVYFMINNESTQLPSPKQPAFFVAQNPTSSEPQPVDNTDSGLIIQPPAQPTLQICSLNTMSLSVMVAR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34111987 34113588 - Lsi02G027870.1 Lsi02g02787 657529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02787 365 Gene3D Phosphorylase Kinase; domain 1 4 104 - -
Lsi02g02787 365 Gene3D Transferase(Phosphotransferase) domain 1 105 315 - -
Lsi02g02787 365 PANTHER OS01G0783800 PROTEIN 10 319 - -
Lsi02g02787 365 Pfam Protein tyrosine and serine/threonine kinase 34 242 IPR001245 GO:0004672|GO:0006468
Lsi02g02787 365 SUPERFAMILY Protein kinase-like (PK-like) 14 337 IPR011009 -
Lsi02g02787 365 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02787 365 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 319 - -
Lsi02g02787 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lsi02g02787 365 CDD STKc_IRAK 35 305 - -
Lsi02g02787 365 SMART serkin_6 29 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02787 Lsi-Chr2:34111987 Lsi02g02789 Lsi-Chr2:34134781 0 dispersed
Lsi02g02787 Lsi-Chr2:34111987 Lsi02g02788 Lsi-Chr2:34124583 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83443 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02787 - - csv:101219965 607.831