Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02788 ATGCTTCTATTCCCTCACCCTCAATTCTCTGTACTCTGCTGTTTGTTTGTAGCGCTTGTTCCGGCGGAGTTTTCCCACGGCGAGTCTACAGTCGCCGATAATGTACTTGCACAAGGGCAAGAGCTAAGATTTGGGTCTCAGTTAATTTCAGCCACCCGCACCTTTGTGCTAGGATTTTACAATCCTTACAATTCTAATACCACTTATTTAGGGATCTCCTACAACACTAATGATCAGAAGCCAGTTTGGATAGCCAACCCAAACTCTCCAATATTCTTCAACAATTCGGCTTCCATCAGCCTCACCATCGACGTCAACGGCAGCTTGAAAATTAAAAATGGGTATTATCATTCCTTTTCACTCTTCGATGCGGAACAACCCACCAACAGCAGCGCCATGTTGCAAGACGACGGCAACTTTGTACTGCAGGAGCTGAACAGAGATGGGTCGGTTAAACAGGTGGTGTGGCAGAGCTTTGATCATCCAACAGACACTCTGCTTCCGGGAATGAAATTTGGGATCAATTACAAGACAAACTCCACTTGGTCATTAACATCATGGAGAACCTATGAATCTCCGATGCCAGGAGCTTTCACTCTGGCAGTGAATCCAAACAATACATATGAGTTACTGGTGTTGTTCCGAGGTGCTCTGTTTTGGAGAAGCGGGAATTGGGAAAACGGTTTGTTCGAATTCATAGAATATCTGTCGAATAAGAACCATGGAATCAATTTCAATCGAGTTTCGAATGAGAATGAAACGTATTTTATTTACTTCATCCCCAAATTCGATTATTCTTCCCCCTCTTACGAATATCGACATGCATACTCCACAGAACCAAGAGTGGTTCTACCCCAAGTGAGATTAGAAGAAGATGGGGGATTGTGGATAAATAATCAGGACTCGCACACCTTTTGCTCCCTCCTTGAAAATGAGCCGGATGAAGGGTGTGTGTGGAAAGAACAGCAGAAAATTCCGGAGTGCAGGAATTGGTTGTATGGATATAGCGAGCCATTTAGCTCGAGGTTTGGTTACATGGAGGAGGCCATTAATGGTTCTAACTACTACGAACAAACTGGGGACCTAAAGATGTTTGAATGCGAAAATATTTGCATTCTTGATTGTGATTGCATTGCTTTTGGGTTTACCGATGAAGAAAATGGCACCCGCTGTGAGATCTGGAAATCAGGAGCCAACTTTATTTCGGTCAACCGCGATCCTCCAGTTTCTGCTACAAATAATTTTGGAGATGAATGTAAGCTGGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATCTTGACGGATGGGCAAGAAGTAGCCATTAAAAGATTGTCAAAGAATTCAGGACAAGGATTGGTGGAGTTTAAGAATGAAACTATTTTGATTGCCAAACTTCAACACACCAATTTGGTTAGGCTTATTGGTTGTTGCCTTCATAAAGATGAGAAATTGCTTGTTTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAATATTAGATTGGGAAAAACGTTTGCACATCATCCAAGGGATAGTTCAAGGACTACTCTACCTTCACTACTACTCAAGAGTACGAATAATTCATCGAGATTTAAAAGTTAGCAACATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTCGGTATGGCTAGAGTGTTTAAGCCGTCGGAGCACGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTCTCAATAAAGTCGGACGTGTATAGCTTTGGAATACTATTATTGGAGATCGTAACAAGTCGGAAAAACTACAACAATTATGACACGGAACGACCATTGAATTTGATAGGATATGCATGGGAATTGTGGGTAAATGGAAGAGGAGAAGAGCTGATTGAAATGGGATTGTACAAGAATTGCGATGAGAAAGCAAAGGGAGGTATAATTAGGTGCATTCATGTGAGTCTTTTGTGTGTACAACAAATCCCAGGGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGAATCAACTCAACTTCCATCTCCCAAACAACCTGCCTTTTTTGTTGCTCAAAATCCAACTTCCTCAGAACCACAACCGGTGGATAATACTGATAGTGGGCTCATCATACAACCACCTGCACAACCAACCTTGCAAATTTGTTCGTTGAATACTATGTCACTCTCAGTCATGGTTGCTAGGTGA 2256 41.76 MLLFPHPQFSVLCCLFVALVPAEFSHGESTVADNVLAQGQELRFGSQLISATRTFVLGFYNPYNSNTTYLGISYNTNDQKPVWIANPNSPIFFNNSASISLTIDVNGSLKIKNGYYHSFSLFDAEQPTNSSAMLQDDGNFVLQELNRDGSVKQVVWQSFDHPTDTLLPGMKFGINYKTNSTWSLTSWRTYESPMPGAFTLAVNPNNTYELLVLFRGALFWRSGNWENGLFEFIEYLSNKNHGINFNRVSNENETYFIYFIPKFDYSSPSYEYRHAYSTEPRVVLPQVRLEEDGGLWINNQDSHTFCSLLENEPDEGCVWKEQQKIPECRNWLYGYSEPFSSRFGYMEEAINGSNYYEQTGDLKMFECENICILDCDCIAFGFTDEENGTRCEIWKSGANFISVNRDPPVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCLHKDEKLLVYEYMPNKSLDFFLFDSEKKLILDWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIEMGLYKNCDEKAKGGIIRCIHVSLLCVQQIPGDRPTMLDVYFMINNESTQLPSPKQPAFFVAQNPTSSEPQPVDNTDSGLIIQPPAQPTLQICSLNTMSLSVMVAR 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34124583 34132197 - Lsi02G027880.1 Lsi02g02788 657530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02788 751 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE CES101 26 396 - -
Lsi02g02788 751 Gene3D Phosphorylase Kinase; domain 1 390 490 - -
Lsi02g02788 751 Pfam D-mannose binding lectin 82 188 IPR001480 -
Lsi02g02788 751 SMART serkin_6 415 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02788 751 ProSiteProfiles Protein kinase domain profile. 415 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02788 751 CDD STKc_IRAK 421 691 - -
Lsi02g02788 751 ProSiteProfiles PAN/Apple domain profile. 328 419 IPR003609 -
Lsi02g02788 751 Gene3D Transferase(Phosphotransferase) domain 1 491 701 - -
Lsi02g02788 751 Pfam PAN-like domain 362 396 IPR003609 -
Lsi02g02788 751 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE CES101 409 717 - -
Lsi02g02788 751 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 191 IPR036426 -
Lsi02g02788 751 Pfam Protein tyrosine and serine/threonine kinase 420 628 IPR001245 GO:0004672|GO:0006468
Lsi02g02788 751 SUPERFAMILY Protein kinase-like (PK-like) 408 723 IPR011009 -
Lsi02g02788 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Lsi02g02788 751 Gene3D - 29 160 IPR036426 -
Lsi02g02788 751 SMART blect_4 33 162 IPR001480 -
Lsi02g02788 751 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 396 - -
Lsi02g02788 751 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 409 717 - -
Lsi02g02788 751 CDD B_lectin 33 162 IPR001480 -
Lsi02g02788 751 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Lsi02g02788 751 PIRSF SRK 408 751 IPR024171 GO:0004674
Lsi02g02788 751 PIRSF SRK 5 409 IPR024171 GO:0004674
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02788 Lsi-Chr2:34124583 Lsi05g00671 Lsi-Chr5:8855325 2.56E-138 dispersed
Lsi02g02787 Lsi-Chr2:34111987 Lsi02g02788 Lsi-Chr2:34124583 0 tandem
Lsi02g02788 Lsi-Chr2:34124583 Lsi02g02789 Lsi-Chr2:34134781 4.00E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83444 PF07714 PK_Tyr_Ser-Thr 2.20E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02788 - - qsu:112016215 576.244