Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02789 ATGGCGATTGGGAATGGAATTACAACACGAATTCTTCCATTTTCAAGCTTTCTAAACTGCTATTATTGCTTTATAACAGTGTTTTTTTTGGTCGAGTTTTCCCTTGGCCAGTACACACAAACCAATAATGTTCTTACGCAAGGCCAAAAGCTATCAATTGGGTCTCAATTAATTTCATCCACCGCCACTTTTATGCTAGGATTTTACAATCCGCACAATTCTAATACCACTTATTTAGGAATCTCCTACAACATAAATCATCAGAAGCCAATCTGGATAGCCAATCCAAACTCCCCATTTCCCAACAATTCTGTTTCGATCAGTCTCACCATCGACGCCAACGGCAGCTTGAAAATTCAAAATGGCTATTATTCCTTTTCACTCTTCGATGTCGGACAACCAACCACCAGCAACGCCCTGTTGCAAGACGACGGCAACTTTGTACTGCGAGAGCTGAACAGAGATGGATCGGTTAAGCAAATTCTGTGGCAGAGCTTTGATCATCCAACAGATACTCTGCTTCCCGGAATGAAAATTGGGATTAATCACAAAACAAACTCCACTTGGTCATTAACATCATGGAGAACCATTGAATCTCCCATGGCAGGAGCTTTCACTCTGGCAATGAATCCAAACAATACATATCAATTACTGATGTTTTTCAGAGGTGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAATTCTTACAATATCTGTCGAATTTCAACCCTTACAATAACAATCAAAACCAAGAAATGTATATCAATCGAGTTTCGAATGAGAATGAAACGTATTTCATTTACTACATACCGAAATTCGATCGATCTCCCACTCCTTACGCGTATCGAAATCCATATTACCAAGAATCAGGGGAATTTGTACTACCCCAATTGAGATTAGAAGATGGTGGGAATTTGGGGATTAACAATCAAGGTTCGTACTCTGTTTGCTCCCTGTTTGAAAATGAGGATGGAGGAATTGGTTGTATGGATATAGCGAGCCATTTAGCTCGAGGTTTGGAGGGAATTAATAGTTCTAATTACTACAAACAAAGTGGGAACTTAACCATGTTTGAATGTGAAACTATCTGCATTTTTTATTGTGATTGCATCGCTATTGGGTTTAGCGATGAAGAAGATGGCACCAGCTGTGAGATTTGGAAATCAGGAGCCAAGTTTTTTTCAGTGGACGGCGGTTCACCAAAGAAAATGGAAGGTTTGGATGCAAGTTACTGTCGCTCTAACCATACCTGCGATTTTTCTCCTACTATGTTTTATTTTCTACTTACGGGGAAAATGAAGAGAAGTTTTCTTTGCGTGATCGGGTTCATATCCGAAGGTTTTAATATTTTAGGAATAATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAATTTTTTGACTTTGAAACCATAGTTTCTGCTACAAATAATTTTGGAGATGAATGTAAGCTGGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATCTTGACGGATGGGCAAGAAGTAGCCATTAAAAGATTGTCAAAGAATTCAGGACAAGGATTGGTGGAGTTTAAGAATGAAACTATTTTGATTGCCAAACTTCAACACACCAATTTGGTTAGGCTTATTGGTTGTTGCCTTCATAAAGATGAGAAATTGCTTGTTTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAATATTAGATTGGGAAAAACGTTTGCACATCATCCAAGGGATAGTTCAAGGACTACTCTACCTTCACTACTACTCAAGAGTACGAATAATTCATCGAGATTTAAAAGTTAGCAACATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTCGGTATGGCTAGAGTGTTTAAGCCGTCGGAGCACGAAGCAAATACAAGTCGAGTGGTTGAATATGCAATGGAGGGCATTTTCTCAATAAAGTCGGACGTGTATAGCTTTGGAATACTATTATTGGAGATCGTAACAAGTCGGAAAAACTACAACAATTATGACACGGAACGACCATTGAATTTGATAGGATATGCATGGGAATTGTGGGTAAATGGAAGAGGAGAAGAGCTGATTGAAATGGGATTGTACAAGAATTGCGATGAGAAAGCAAAGGGAGGTATAATTAGGTGCATTCATGTGAGTCTTTTGTGTGTACAACAAATCCCAGGGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGAATCAACTCAACTTCCATCTCCCAAACAACCTGCCTTTTTTGTTGCTCAAAATCCAACTTCCTCAGAACCACAACCGGTGGATAATACTGATAGTGGGCTCATCATACAACCACCTGCACAACCAACCTTGCAAATTTGTTCGTTGAATACTATGTCACTCTCAGTCATGGTTGCTAGGTGA 2445 39.22 MAIGNGITTRILPFSSFLNCYYCFITVFFLVEFSLGQYTQTNNVLTQGQKLSIGSQLISSTATFMLGFYNPHNSNTTYLGISYNINHQKPIWIANPNSPFPNNSVSISLTIDANGSLKIQNGYYSFSLFDVGQPTTSNALLQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRTIESPMAGAFTLAMNPNNTYQLLMFFRGALFWSSGNWKDGSFEFLQYLSNFNPYNNNQNQEMYINRVSNENETYFIYYIPKFDRSPTPYAYRNPYYQESGEFVLPQLRLEDGGNLGINNQGSYSVCSLFENEDGGIGCMDIASHLARGLEGINSSNYYKQSGNLTMFECETICIFYCDCIAIGFSDEEDGTSCEIWKSGAKFFSVDGGSPKKMEGLDASYCRSNHTCDFSPTMFYFLLTGKMKRSFLCVIGFISEGFNILGIMIRQIRDGKKNPELQFFDFETIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCLHKDEKLLVYEYMPNKSLDFFLFDSEKKLILDWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIEMGLYKNCDEKAKGGIIRCIHVSLLCVQQIPGDRPTMLDVYFMINNESTQLPSPKQPAFFVAQNPTSSEPQPVDNTDSGLIIQPPAQPTLQICSLNTMSLSVMVAR 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34134781 34139073 + Lsi02G027890.1 Lsi02g02789 657531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02789 814 ProSiteProfiles Bulb-type lectin domain profile. 42 162 IPR001480 -
Lsi02g02789 814 Gene3D Phosphorylase Kinase; domain 1 460 561 - -
Lsi02g02789 814 CDD B_lectin 51 169 IPR001480 -
Lsi02g02789 814 SUPERFAMILY Protein kinase-like (PK-like) 471 786 IPR011009 -
Lsi02g02789 814 SMART serkin_6 486 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02789 814 ProSiteProfiles Protein kinase domain profile. 486 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02789 814 SMART blect_4 42 169 IPR001480 -
Lsi02g02789 814 Gene3D - 37 167 IPR036426 -
Lsi02g02789 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 90 770 - -
Lsi02g02789 814 PIRSF SRK 14 287 IPR024171 GO:0004674
Lsi02g02789 814 PIRSF SRK 332 814 IPR024171 GO:0004674
Lsi02g02789 814 Pfam Protein tyrosine and serine/threonine kinase 491 691 IPR001245 GO:0004672|GO:0006468
Lsi02g02789 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 196 IPR036426 -
Lsi02g02789 814 Pfam D-mannose binding lectin 91 195 IPR001480 -
Lsi02g02789 814 Gene3D Transferase(Phosphotransferase) domain 1 562 764 - -
Lsi02g02789 814 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 90 770 - -
Lsi02g02789 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02739 Lsi-Chr2:33658190 Lsi02g02789 Lsi-Chr2:34134781 0 dispersed
Lsi02g02787 Lsi-Chr2:34111987 Lsi02g02789 Lsi-Chr2:34134781 0 dispersed
Lsi02g02789 Lsi-Chr2:34134781 Lsi02g00681 Lsi-Chr2:6103145 3.06E-138 dispersed
Lsi02g02788 Lsi-Chr2:34124583 Lsi02g02789 Lsi-Chr2:34134781 4.00E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83445 PF07714 PK_Tyr_Ser-Thr 8.80E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02789 - - csv:101219965 1031.55