Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02791 ATGGATTTCTGGCCAGAATTTCTTGCAAACAGTTGGGGTAGAGAATTTGTCGCCGGTGGATTTGGTGGCATCGCCGGCATAATCTCCGGCTACCCACTTGATACTCTTCGAGTAAGGCAACAGCAATCGATTTCTGGTTCTGCTTTGAAAATCTTTCGAAATATCATTGCCAACGATGGCATTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGGGCATTCAACTCCTCTTCCCAATCCTATGGTGACCCTCCAAGTTATAAGGCTGTGGCTTTTGGAGGAGTTGGTACCGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTCGTGAAGATCCGCCTGCAATTGCAGAGTGCAAACCATGCAGCAGCAACACAACAACAATTAATTTCTTCTTCCTCTTCTTCTCATAGAGGTCCATTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCTGCACATGGCATCTATTTCTGGACATATGAGCGCATGAGAGAGCAGTTCCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGCGTCGGCACAATGCTGGTCGCTGGAGGGCTTGCCGGAGTTGCCAGCTGGGTTTTTTGTTATCCTTTGGATGTATTGAAGACAAGAATTCAGGGTCAGACACAAAGTTCATCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTGAGAGAAGAGGGTTACAGAGTGCTATGGCGAGGGCTGGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTTCTGCTTATGAGATAACTTTGAGGTGTTTGTTTAGCAATGGAAGCAATCAGACACAGCTCTGA 945 48.47 MDFWPEFLANSWGREFVAGGFGGIAGIISGYPLDTLRVRQQQSISGSALKIFRNIIANDGIAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSSQSYGDPPSYKAVAFGGVGTGALQSFILSPVELVKIRLQLQSANHAAATQQQLISSSSSSHRGPLSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYERMREQFHPGCRKTGQESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFSNGSNQTQL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34149266 34151084 + Lsi02G027910.1 Lsi02g02791 657533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02791 314 Gene3D Mitochondrial carrier domain 4 109 IPR023395 -
Lsi02g02791 314 SUPERFAMILY Mitochondrial carrier 11 298 IPR023395 -
Lsi02g02791 314 Gene3D Mitochondrial carrier domain 110 313 IPR023395 -
Lsi02g02791 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Lsi02g02791 314 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Lsi02g02791 314 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Lsi02g02791 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Lsi02g02791 314 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Lsi02g02791 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 204 IPR018108 -
Lsi02g02791 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
Lsi02g02791 314 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Lsi02g02791 314 Pfam Mitochondrial carrier protein 216 306 IPR018108 -
Lsi02g02791 314 Pfam Mitochondrial carrier protein 111 205 IPR018108 -
Lsi02g02791 314 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 306 - -
Lsi02g02791 314 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 306 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02791 Lsi07g00504 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02791 Lsi-Chr2:34149266 Lsi06g01417 Lsi-Chr6:24728079 4.46E-06 dispersed
Lsi02g00770 Lsi-Chr2:7087605 Lsi02g02791 Lsi-Chr2:34149266 4.75E-20 transposed
Lsi07g01202 Lsi-Chr7:17509569 Lsi02g02791 Lsi-Chr2:34149266 5.13E-46 transposed
Lsi09g00822 Lsi-Chr9:9426207 Lsi02g02791 Lsi-Chr2:34149266 3.46E-07 transposed
Lsi02g02791 Lsi-Chr2:34149266 Lsi07g00504 Lsi-Chr7:5298802 3.71E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02791 K15109 - csv:101222165 549.666