Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02816 ATGAAAGCAATTAAAAGCCCGCGTCTTGATTACTCACATTTTGTGTCCCTCCCCCTGGCCATACACCCTGAATTAGTCGAGAAGCTTATTAATTTCCAGAACATCATACTAGGAAGTTCTGAGTCTTGCTTAGATGAGGCTGAGGACAGTGATACAAATGAAGATAATACAGACAATGAAGTTGAGGTTCAACATACTGTTAAAGCACCAGATGTTGCAGTTGAACTAAAAGTGGATGATAAACGTGAGCAAATCAAAGTGAACATAAATATACCTGTTGTCAGTTATCCTCCTAAAACTTCGAGGGCTTCTACACCATCTGAAGTCATTATTGATGCATTTACTGAAGCCGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGTTTGATTTCTCTGTCATGGTTGATATGGCACCGCAATGCTTGAACAGTAAAAAGAAAAAGAAGTTTGATTCATTTGATGCTCGTGAAATTTTCAAGCAGTATGGGTCAGAGGAATGGGGTGAGTATCATATCCGTGAAGCTCATCTCTCCCAAAGATTTGCATTTGATGAAAATGGATACTACCATTCCTGTGCTTCCATACCTTTCCCTGATGAACAGATGCAAGATCAAAAGCTCTCAATTATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTGCGCTCTTGCAAGGCTTATCTAGCTGAGTTCATCTCTACCTTACTCTTCGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCTGCAGCTCTAGATCCAGCAGGGCTGGTTGCGGTGGCTGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCCGTCGGAGCTAACATCTCCGGTGGCCACGTCAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTAATTACCACCATTTTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTCGCGGTTCCGGTCCACAGCGTTGCCGCCGGCGTCGGAGCGGCGGAAGGGGTTGTGACGGAGATTGTAACCACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATCGGTTTGATCGTCGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGGTCGATGAACCCAGCCCGATCATTCGGCCCGGCTGTAGTCAGTGGCGACTTTCACGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAACGATTTCTAA 1380 47.54 MKAIKSPRLDYSHFVSLPLAIHPELVEKLINFQNIILGSSESCLDEAEDSDTNEDNTDNEVEVQHTVKAPDVAVELKVDDKREQIKVNINIPVVSYPPKTSRASTPSEVIIDAFTEAGLVLEKDAKQKLKFDFSVMVDMAPQCLNSKKKKKFDSFDAREIFKQYGSEEWGEYHIREAHLSQRFAFDENGYYHSCASIPFPDEQMQDQKLSIMAWFTIGSFQDSLSLRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34324196 34330388 + Lsi02G028160.1 Lsi02g02816 657558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02816 459 CDD MIP 230 443 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 Pfam Major intrinsic protein 225 443 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PANTHER MIP PROTEIN 212 459 - -
Lsi02g02816 459 SUPERFAMILY Aquaporin-like 226 453 IPR023271 -
Lsi02g02816 459 Pfam AKAP7 2'5' RNA ligase-like domain 107 199 IPR019510 -
Lsi02g02816 459 Gene3D Glycerol uptake facilitator protein. 213 451 IPR023271 -
Lsi02g02816 459 TIGRFAM MIP: MIP family channel proteins 234 443 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 ProSitePatterns MIP family signature. 292 300 IPR022357 -
Lsi02g02816 459 PANTHER AQUAPORIN-8 212 459 IPR034294 -
Lsi02g02816 459 Gene3D Cyclic phosphodiesterase 74 203 - -
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 389 411 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 274 298 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 311 330 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 426 446 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 230 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g02816 459 PRINTS Major intrinsic protein family signature 356 374 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00286 Lsi-Chr2:2454034 Lsi02g02816 Lsi-Chr2:34324196 9.15E-78 dispersed
Lsi02g01671 Lsi-Chr2:22504748 Lsi02g02816 Lsi-Chr2:34324196 4.67E-73 dispersed
Lsi02g02816 Lsi-Chr2:34324196 Lsi09g00431 Lsi-Chr9:4593972 1.81E-113 dispersed
Lsi09g00101 Lsi-Chr9:900849 Lsi02g02816 Lsi-Chr2:34324196 3.37E-29 dispersed
Lsi09g00102 Lsi-Chr9:909810 Lsi02g02816 Lsi-Chr2:34324196 1.89E-31 dispersed
Lsi02g02816 Lsi-Chr2:34324196 Lsi03g01989 Lsi-Chr3:31267990 1.39E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02816 K09873 - csv:101218611 452.981