Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02820 | ATGGCAAAACCAAAGAATTCAAATCCCCAAAACAAAAGCAACCCTCTTCCCACTACTCCGACCGACAAAAGACCAAGAGACTGCAACAAACATCCGGTTTTCCGAGGCGTACGGAAGAGAAGCTGGGGAAAATGGGTATCAGAAATCCGGCAACCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCGACGCCGGAGATGGCAGCGCGTGCACACGACGCAGCGGCCTTATGTATCAAAGGCGACTCTGCCATCCTCAATTACCCTGAACTTGCAGAGTTTTTGCCTCGGCCGGCGTCGCTTATGCCGCACGACGTTCAGGCTGCCGCCGCCAAAGCTGCAGCGATGGTCAATTTGAATTCCTCTGCATTGACGTCGCCGTCGGAGGAGGAGGAGGAGCTGAGTGAAATCGTCGAGTTGCCGAATATAGAAGACGATTTTGGTGCTGAGTCGCTGAACGAGTTCAGATTGGTTACTGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCGTTGGCGGCGGAATTCGATTGCGGTTATTTTTCCGACCAAACGACGGCGGAGGAAAGTTCTAACCCGAGCAGCTTTTACGGTGTTCTTTGGGAATAA | 612 | 52.61 | MAKPKNSNPQNKSNPLPTTPTDKRPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELAEFLPRPASLMPHDVQAAAAKAAAMVNLNSSALTSPSEEEEELSEIVELPNIEDDFGAESLNEFRLVTESWEWWESVAMPLAAEFDCGYFSDQTTAEESSNPSSFYGVLWE | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34357667 | 34358278 | + | Lsi02G028200.1 | Lsi02g02820 | 657562 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02820 | 203 | Pfam | AP2 domain | 32 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi02g02820 | 203 | CDD | AP2 | 34 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | PRINTS | Ethylene responsive element binding protein signature | 56 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 4 | 155 | - | - | |
Lsi02g02820 | 203 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 | 4 | 155 | - | - | |
Lsi02g02820 | 203 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi02g02820 | 203 | SUPERFAMILY | DNA-binding domain | 33 | 90 | IPR016177 | GO:0003677 | |
Lsi02g02820 | 203 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Lsi02g02820 | 203 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02820 | Lsi-Chr2:34357667 | Lsi06g00816 | Lsi-Chr6:17232586 | 7.61E-50 | dispersed | |
Lsi02g02820 | Lsi-Chr2:34357667 | Lsi07g00520 | Lsi-Chr7:5483691 | 6.36E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24929 | PF00847 | AP2 | 5.50E-15 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02820 | K09286 | - | csv:101217361 | 332.028 |