Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02820 ATGGCAAAACCAAAGAATTCAAATCCCCAAAACAAAAGCAACCCTCTTCCCACTACTCCGACCGACAAAAGACCAAGAGACTGCAACAAACATCCGGTTTTCCGAGGCGTACGGAAGAGAAGCTGGGGAAAATGGGTATCAGAAATCCGGCAACCGCGTAAGAAATCCCGAATTTGGCTCGGCACTTTTCCGACGCCGGAGATGGCAGCGCGTGCACACGACGCAGCGGCCTTATGTATCAAAGGCGACTCTGCCATCCTCAATTACCCTGAACTTGCAGAGTTTTTGCCTCGGCCGGCGTCGCTTATGCCGCACGACGTTCAGGCTGCCGCCGCCAAAGCTGCAGCGATGGTCAATTTGAATTCCTCTGCATTGACGTCGCCGTCGGAGGAGGAGGAGGAGCTGAGTGAAATCGTCGAGTTGCCGAATATAGAAGACGATTTTGGTGCTGAGTCGCTGAACGAGTTCAGATTGGTTACTGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCGTTGGCGGCGGAATTCGATTGCGGTTATTTTTCCGACCAAACGACGGCGGAGGAAAGTTCTAACCCGAGCAGCTTTTACGGTGTTCTTTGGGAATAA 612 52.61 MAKPKNSNPQNKSNPLPTTPTDKRPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELAEFLPRPASLMPHDVQAAAAKAAAMVNLNSSALTSPSEEEEELSEIVELPNIEDDFGAESLNEFRLVTESWEWWESVAMPLAAEFDCGYFSDQTTAEESSNPSSFYGVLWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34357667 34358278 + Lsi02G028200.1 Lsi02g02820 657562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02820 203 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g02820 203 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 155 - -
Lsi02g02820 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042 4 155 - -
Lsi02g02820 203 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Lsi02g02820 203 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Lsi02g02820 203 MobiDBLite consensus disorder prediction 1 34 - -
Lsi02g02820 203 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02820 Lsi-Chr2:34357667 Lsi06g00816 Lsi-Chr6:17232586 7.61E-50 dispersed
Lsi02g02820 Lsi-Chr2:34357667 Lsi07g00520 Lsi-Chr7:5483691 6.36E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24929 PF00847 AP2 5.50E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02820 K09286 - csv:101217361 332.028