Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02823 ATGTGGAGGCTCAAGGTAGCAGATGGCGGAAATGACCCTTACATCTATTCTATGAACAACTTTGTAGGAAGGCAAATATGGGAATTCGACCCAAACGCAGGCACCCCCGAAGAGCGGGCCAAAGTCGAACGCGTTCGCAATGAGTTCACCAAAAATCGTTTCAAGGGTTTTCCAAGCGCTGACTTGCTTTGGCGTCTTCAGCTTCTAAGAGAGAAGAATTTCAAACAAAGTATTCCACCGGTAAAGATTGAAGAGGGAGAAGAAATCAGTTACGAAATGGCATCGGATGCAATGAGAAGAGGGGCGTATTTCTTGGCGGCCATACAAGCGAGTGATGGACATTGGCCCAGCGAAACATCGGGCCCACTATTTTACTTGTGTCCCCTTCTAATTTGCATGTATATAATGGGCTTTATGGATTCCGCATTCACTCCCGAGCACAAAAAAGAAATGATGCGTTACGTTTACAACCATCAGAATGAAGATGGTGGATGGGGGCTACATGTAGGTGGTCACAGTAACATGTTCTGCACTACCTTCAATTATATCTCTTTACGTTTACTTGGTGAAGGACCTGATGTTGAGCCACTTTCTAGAGGCAGAAAGTGGATTCGTGACCACGACGGTGTCACCTCCATACTTTCCTGGGGAAAGACGTGGCTCTCGATATTAAACGTGTTCGACTGGTCGGCAAGCAACCCCATGCCTCCTGAATATTGGATGTTTCCCACTTGGGTCCCCATTCATCCATCAAACATGATGTGCTACACTCGAATCACCTACATGCCTATGTCTTATTTGTACGGGAAAAGGTTTCAAGCACCTCTAACGCCTCTTGTTTTACAATTGAGAGATGAACTTCACACCCAACCCTACGACCAAATTAATTGGAAAAAAGTTCGCCACATGTGTGCTACGGAAGACCTCTATTTTCCACATCCTTTTGTCCAAGACTTGCTTTGGGACACTCTTTACTTGATGAGTGAGCCACTCATGACCCGGTGGCCTTTTAACAAATTGATTCGCCAAAAAGCGCTTAATGAAACTATGAGGCATATTCATTATGAGGATGAAAATAGTCGCTACATTACCATTGGCTGCGTCGAAAAGCCATTATGCATGCTAGCTTGTTGGGTTGAAGATCCAAATAGTGAGTATGTGAAGAAGCATTTTGCGAGAATTCCTGATTATTTATGGATGGCGGAAGATGGGATGAAAATGCAGAGTTTTGGTAGCCAGTCATGGGATGCTGCTCTGGCAATGCAAGCTCTGCTTTCTTGTAATATCCCACAGGAAATTGGGCCTGCTCTCAACACTGGCCATGACTTCATCAAGAATTCCCAGGCAATACTCTTATTTAGGAAGCAATACCCAGGACATAGAAGGAAAGAGATCAATAATTTTATCAATAAGGCCGTTCAATTTCTTCAAGACATACAATTGCCTGATGGTTCATGGTATGGAAATTGGGGAATTTGCTATACTTATGGAACGTGGTTCGCGCTTAAGGCATTGTCAATGGCGGGAAAGACGTATGAAAATTGTGAGGCGCTTCGGAAAGGAGCCAACTTTCTAATCAAGATACAAAATCCAGAAGGAGGGTTTGGCGAGAGCTACTTGTCATGTCCTTACAAGGCAGATGTAGACCCCGCTCCTATTCATCGTGCTGCTAAGTTGTTGATCAATTCTCAAACAGAAGATGGTGATTTTCCACAAGAGGAAATTACTGGAGAATTCTTCAAAAATTGTACCTTACACTTTGCAGCATTTAGAGAAGTATTTCCTGTGATGGCACTAGGAGAATATTGTAACAAGGCCAATCACCCCTTGAAGAAAGCGGAACGAGTTGAAGGAGGAGGAAGAAGAAGGACCAGAACCAGAACCAGAACCAGAGACCCAACCTTCTCTCTCGCAACTCTCAGAGTTGCACTAGTCCAAGCTGCATCATTAGTCCATCAGCATTTTGCCCAACTCCATGTTGGAGGAATTTCCAAAATTCAGCGACCAGGGTCGGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTGTTGCGCGGAGGGTAAATTCCTCCCATACCGTGCTCATGGACGATGACATTGAAAATGCTAGTTTGGGGGTGTACCAAGATAGGCAAAGGACTTTCCCTGACATGCGTAGTAAAGTCAACACCCCATTGATTTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACGCAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCCGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCGTCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCCGACGGTCTGCGAGGGAGGCATTGCAGATTGCCGTCCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCAATCCTGTATGCTGCATTTTATGTTTGGTTAGATGTGGGTTCGCCAGGTTCAACGAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGCTTTGGAGCTTCTTTTGTTGCCCTGTTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGAGCAGACCTTGTTGGAAAAGTTGAGCAGGGAATACCAGAAGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGTGATTGTGCCGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGAACAATGGCTGAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTTTCTATCAGGAGGGGTACTCGGGAATCTGGTGTTAAGGGTCCCGTAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCATTCTAGCTGTTCTAACGTTTGGCTTGTCTACCAGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCCGTGCGTTCATTAGCACTTTCTAGCTCGACAGGCCATGGGACGAACATAATTGCTGGAGTCAGTTTGGGCCTAGAATCAACAGCACTTCCTGTTCTTGTTATAAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTTGTGGACGAAGCTGGAAATCCAACTGGTGGACTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTTGCATCCTTCTTACTTTTCAGTGCTTATATGGATGAGGTAGCTGCCTTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGCTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGTCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTCTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCTATGGCAGTTGGCTTCCTGTTTAGAATATTGGGACACTATACTGGGCAGCCGCTTTTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTCGCGACAGTTTCCGGTATTCTCATGGCCCTTTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACTGGGGTACTTGGAGGCAAAGGTAGCGATTGTCATAAAGCAGCCGTAACTGGGGACACGAGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATAAAAATGCTCGCAACCATAACGCTGGTCATGGCCCCGATCTTTCTCTGAAGATCGATTGCTTGCATATGCATATGCACAGCCACACCCTCCTGTTTTGTTGTGTTGAGGATATCTTCAAAGACAGACACATGGCATGGAATCTGAAGAACACCCTGTTGGTGAAAACCAAATTCTTCCTCAGCTTCTCGCAGCAATATTTGGAATGCTTGGTGAGTGAGTACAAACTTCGATCTACGGCGAAAGAAATGGAGTCACAAGCAATTGGGTTAGCAGAGATAGATGGTCGGCGTATATGGCGAAGAATGGCAACGGCGGCGGCGGCGGAAGCTGAAGCAGCAAAGCTTAGTGGCTGCGGCTAG 4599 45.53 MWRLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEERAKVERVRNEFTKNRFKGFPSADLLWRLQLLREKNFKQSIPPVKIEEGEEISYEMASDAMRRGAYFLAAIQASDGHWPSETSGPLFYLCPLLICMYIMGFMDSAFTPEHKKEMMRYVYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVEPLSRGRKWIRDHDGVTSILSWGKTWLSILNVFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLRDELHTQPYDQINWKKVRHMCATEDLYFPHPFVQDLLWDTLYLMSEPLMTRWPFNKLIRQKALNETMRHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSEYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLSCNIPQEIGPALNTGHDFIKNSQAILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLIKIQNPEGGFGESYLSCPYKADVDPAPIHRAAKLLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREVFPVMALGEYCNKANHPLKKAERVEGGGRRRTRTRTRTRDPTFSLATLRVALVQAASLVHQHFAQLHVGGISKIQRPGSGGDLPQGGEYNPYPVARRVNSSHTVLMDDDIENASLGVYQDRQRTFPDMRSKVNTPLISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFYVWLDVGSPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKGPVEDPMTILQRGYSVTIILAVLTFGLSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVAAFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTRPIQGHSRAFSSRSHKNARNHNAGHGPDLSLKIDCLHMHMHSHTLLFCCVEDIFKDRHMAWNLKNTLLVKTKFFLSFSQQYLECLVSEYKLRSTAKEMESQAIGLAEIDGRRIWRRMATAAAAEAEAAKLSGCG 1532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34401225 34426993 + Lsi02G028230.1 Lsi02g02823 657565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02823 1532 MobiDBLite consensus disorder prediction 1401 1423 - -
Lsi02g02823 1532 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 728 1398 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi02g02823 1532 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 348 606 IPR008930 -
Lsi02g02823 1532 PANTHER INORGANIC DIPHOSPHATASE-RELATED 728 1398 - -
Lsi02g02823 1532 Pfam Squalene-hopene cyclase C-terminal domain 464 541 IPR032696 -
Lsi02g02823 1532 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 724 1398 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi02g02823 1532 Pfam Inorganic H+ pyrophosphatase 728 1398 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi02g02823 1532 TIGRFAM squalene_cyclas: squalene/oxidosqualene cyclases 97 448 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lsi02g02823 1532 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
Lsi02g02823 1532 CDD SQCY_1 98 602 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lsi02g02823 1532 Pfam Squalene-hopene cyclase N-terminal domain 102 399 IPR032697 -
Lsi02g02823 1532 ProSitePatterns Terpene synthases signature. 483 497 IPR002365 GO:0016866
Lsi02g02823 1532 Gene3D - 448 613 - -
Lsi02g02823 1532 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 691 1428 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi02g02823 1532 Gene3D - 119 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02823 Lsi-Chr2:34401225 Lsi06g01692 Lsi-Chr6:27127341 1.45E-77 dispersed
Lsi11g00493 Lsi-Chr11:5201019 Lsi02g02823 Lsi-Chr2:34401225 1.68E-83 dispersed
Lsi02g02822 Lsi-Chr2:34374253 Lsi02g02823 Lsi-Chr2:34401225 2.63E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02823 K23025 - csv:101217198 1232.24