Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02834 ATGCCGTCCGTCTATGGAGATCGTTTGACCACATTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTTTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTAGTGACAGGTGGAGACTTGTATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACGTTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATGTTGCTGCACCTGGCCAATATTCATTGAAGATGCTTCTTCCTTATCCAAAAGCTTATTCTTCACAGGATACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCCGTTCTTGGTGGAACATGCGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCCGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAACGTGAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGCTATCCTGCCTATCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGAAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCTGTTTCTCCACCTGGAGGAGATTTTTCTGATCCTGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAGTCTTTCTACGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTCTCAAAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCATTGAAAAATTTAAGAAACTACACGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGGTAG 1881 44.6 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLVTGGDLYATVFENSLMEHHVALPPDAMGKITYVAAPGQYSLKMLLPYPKAYSSQDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34522871 34529653 + Lsi02G028340.1 Lsi02g02834 657576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02834 626 Coils Coil 604 624 - -
Lsi02g02834 626 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 244 470 IPR000194 GO:0005524
Lsi02g02834 626 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 625 IPR022878 GO:0046034|GO:0046961
Lsi02g02834 626 Gene3D - 471 626 IPR024034 -
Lsi02g02834 626 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 614 IPR005725 GO:0033180|GO:0046961|GO:1902600
Lsi02g02834 626 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 483 565 - -
Lsi02g02834 626 Gene3D - 134 217 - -
Lsi02g02834 626 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Lsi02g02834 626 Gene3D - 20 89 IPR023366 -
Lsi02g02834 626 Gene3D - 91 469 IPR027417 -
Lsi02g02834 626 ProSitePatterns ATP synthase alpha and beta subunits signature. 461 470 IPR020003 GO:0005524
Lsi02g02834 626 Pfam ATPsynthase alpha/beta subunit N-term extension 102 235 IPR031686 -
Lsi02g02834 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 475 IPR027417 -
Lsi02g02834 626 CDD V_A-ATPase_A 88 472 - -
Lsi02g02834 626 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Lsi02g02834 626 CDD ATP-synt_V_A-type_alpha_C 487 589 - -
Lsi02g02834 626 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 625 - -
Lsi02g02834 626 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Lsi02g02834 626 Hamap V-type ATP synthase alpha chain [atpA]. 19 625 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02834 Lsi-Chr2:34522871 Lsi04g00205 Lsi-Chr4:2162656 1.22E-21 dispersed
Lsi02g02834 Lsi-Chr2:34522871 Lsi09g00638 Lsi-Chr9:7054782 5.50E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02834 K02145 - csv:101216234 1187.17