Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02834 | ATGCCGTCCGTCTATGGAGATCGTTTGACCACATTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTTTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTAGTGACAGGTGGAGACTTGTATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACGTTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATGTTGCTGCACCTGGCCAATATTCATTGAAGATGCTTCTTCCTTATCCAAAAGCTTATTCTTCACAGGATACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCCGTTCTTGGTGGAACATGCGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCCGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAACGTGAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGCTATCCTGCCTATCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGAAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCTGTTTCTCCACCTGGAGGAGATTTTTCTGATCCTGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAGTCTTTCTACGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTCTCAAAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCATTGAAAAATTTAAGAAACTACACGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGGTAG | 1881 | 44.6 | MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLVTGGDLYATVFENSLMEHHVALPPDAMGKITYVAAPGQYSLKMLLPYPKAYSSQDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETR | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34522871 | 34529653 | + | Lsi02G028340.1 | Lsi02g02834 | 657576 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02834 | 626 | Coils | Coil | 604 | 624 | - | - | |
Lsi02g02834 | 626 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 244 | 470 | IPR000194 | GO:0005524 | |
Lsi02g02834 | 626 | PANTHER | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 3 | 625 | IPR022878 | GO:0046034|GO:0046961 | |
Lsi02g02834 | 626 | Gene3D | - | 471 | 626 | IPR024034 | - | |
Lsi02g02834 | 626 | TIGRFAM | V-ATPase_V1_A: V-type ATPase, A subunit | 20 | 614 | IPR005725 | GO:0033180|GO:0046961|GO:1902600 | |
Lsi02g02834 | 626 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 483 | 565 | - | - | |
Lsi02g02834 | 626 | Gene3D | - | 134 | 217 | - | - | |
Lsi02g02834 | 626 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 25 | 85 | IPR004100 | GO:0046034|GO:1902600 | |
Lsi02g02834 | 626 | Gene3D | - | 20 | 89 | IPR023366 | - | |
Lsi02g02834 | 626 | Gene3D | - | 91 | 469 | IPR027417 | - | |
Lsi02g02834 | 626 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 461 | 470 | IPR020003 | GO:0005524 | |
Lsi02g02834 | 626 | Pfam | ATPsynthase alpha/beta subunit N-term extension | 102 | 235 | IPR031686 | - | |
Lsi02g02834 | 626 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 214 | 475 | IPR027417 | - | |
Lsi02g02834 | 626 | CDD | V_A-ATPase_A | 88 | 472 | - | - | |
Lsi02g02834 | 626 | CDD | ATP-synt_V_A-type_alpha_N | 21 | 87 | - | - | |
Lsi02g02834 | 626 | CDD | ATP-synt_V_A-type_alpha_C | 487 | 589 | - | - | |
Lsi02g02834 | 626 | PANTHER | V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A | 3 | 625 | - | - | |
Lsi02g02834 | 626 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 17 | 89 | IPR036121 | GO:0046034|GO:1902600 | |
Lsi02g02834 | 626 | Hamap | V-type ATP synthase alpha chain [atpA]. | 19 | 625 | IPR022878 | GO:0046034|GO:0046961 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02834 | Lsi-Chr2:34522871 | Lsi04g00205 | Lsi-Chr4:2162656 | 1.22E-21 | dispersed | |
Lsi02g02834 | Lsi-Chr2:34522871 | Lsi09g00638 | Lsi-Chr9:7054782 | 5.50E-27 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02834 | K02145 | - | csv:101216234 | 1187.17 |