Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02837 | ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCACTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTTCCTTTACGTGTTCCGTCGATCCCCATAACTAATCAACAAAATGATAGACATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCCCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGCAATGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGTATGGATGGCATGTAGAGGTTATTGTGTTCTATGTTGGGAATAAGAGAGGCAGTATAGAGATTCTTGTGGACGGATTAGAATTAGACGGCATGGATGTAAATATTTTGAGGATGATTCAAGGGGTTAAAGTAGCTTCAAAGTGGAAATCAAAGGTGTTTAGGCATGGAAAACAGAGGAAATTGAATCCTTTAGTTCCTTTTACAGGGAGGAAAGATCTTAGGGAACTCTCCGGGACCTCTCAAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATAATGGAGATTCTGAGTCCAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTGCGGAATTTAG | 1164 | 43.04 | MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKYGWHVEVIVFYVGNKRGSIEILVDGLELDGMDVNILRMIQGVKVASKWKSKVFRHGKQRKLNPLVPFTGRKDLRELSGTSQKLQIRVDKLQPSIEMRIMEILSPTQKVFRIVTDVYDCCCGI | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34546351 | 34553136 | - | Lsi02G028370.1 | Lsi02g02837 | 657579 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02837 | 387 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Lsi02g02837 | 387 | Gene3D | - | 221 | 327 | IPR013088 | GO:0006355|GO:0008270 | |
Lsi02g02837 | 387 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515 | |
Lsi02g02837 | 387 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 265 | IPR045280 | GO:0006355 | |
Lsi02g02837 | 387 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 265 | - | - | |
Lsi02g02837 | 387 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515 | |
Lsi02g02837 | 387 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 265 | - | - | |
Lsi02g02837 | 387 | CDD | ZnF_GATA | 231 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
Lsi02g02837 | 387 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Lsi02g02837 | 387 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355|GO:0043565 | |
Lsi02g02837 | 387 | Pfam | GATA zinc finger | 231 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Lsi02g02837 | 387 | SMART | GATA_3 | 225 | 279 | IPR000679 | GO:0006355|GO:0043565 | |
Lsi02g02837 | 387 | SMART | tify_2 | 78 | 113 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01145 | Lsi-Chr2:13506790 | Lsi02g02837 | Lsi-Chr2:34546351 | 9.15E-56 | dispersed | |
Lsi02g02837 | Lsi-Chr2:34546351 | Lsi03g00696 | Lsi-Chr3:9136922 | 4.85E-65 | dispersed | |
Lsi02g02837 | Lsi-Chr2:34546351 | Lsi05g01573 | Lsi-Chr5:23500178 | 6.61E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24930 | PF06203 | CCT | 1.20E-14 | CL0281 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02837 | - | - | csv:101215755 | 532.332 |