Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02837 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCACTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTTCCTTTACGTGTTCCGTCGATCCCCATAACTAATCAACAAAATGATAGACATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCCCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGCAATGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGTATGGATGGCATGTAGAGGTTATTGTGTTCTATGTTGGGAATAAGAGAGGCAGTATAGAGATTCTTGTGGACGGATTAGAATTAGACGGCATGGATGTAAATATTTTGAGGATGATTCAAGGGGTTAAAGTAGCTTCAAAGTGGAAATCAAAGGTGTTTAGGCATGGAAAACAGAGGAAATTGAATCCTTTAGTTCCTTTTACAGGGAGGAAAGATCTTAGGGAACTCTCCGGGACCTCTCAAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATAATGGAGATTCTGAGTCCAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTGCGGAATTTAG 1164 43.04 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKYGWHVEVIVFYVGNKRGSIEILVDGLELDGMDVNILRMIQGVKVASKWKSKVFRHGKQRKLNPLVPFTGRKDLRELSGTSQKLQIRVDKLQPSIEMRIMEILSPTQKVFRIVTDVYDCCCGI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34546351 34553136 - Lsi02G028370.1 Lsi02g02837 657579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02837 387 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lsi02g02837 387 Gene3D - 221 327 IPR013088 GO:0006355|GO:0008270
Lsi02g02837 387 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Lsi02g02837 387 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Lsi02g02837 387 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 265 - -
Lsi02g02837 387 Pfam CCT motif 155 197 IPR010402 GO:0005515
Lsi02g02837 387 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Lsi02g02837 387 CDD ZnF_GATA 231 267 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 Pfam tify domain 84 112 IPR010399 -
Lsi02g02837 387 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 SMART tify_2 78 113 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01145 Lsi-Chr2:13506790 Lsi02g02837 Lsi-Chr2:34546351 9.15E-56 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi03g00696 Lsi-Chr3:9136922 4.85E-65 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi05g01573 Lsi-Chr5:23500178 6.61E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24930 PF06203 CCT 1.20E-14 CL0281 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02837 - - csv:101215755 532.332