Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02837 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCACTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTTCCTTTACGTGTTCCGTCGATCCCCATAACTAATCAACAAAATGATAGACATCTCACTGATGAAGCATTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCCCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGCAATGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGTATGGATGGCATGTAGAGGTTATTGTGTTCTATGTTGGGAATAAGAGAGGCAGTATAGAGATTCTTGTGGACGGATTAGAATTAGACGGCATGGATGTAAATATTTTGAGGATGATTCAAGGGGTTAAAGTAGCTTCAAAGTGGAAATCAAAGGTGTTTAGGCATGGAAAACAGAGGAAATTGAATCCTTTAGTTCCTTTTACAGGGAGGAAAGATCTTAGGGAACTCTCCGGGACCTCTCAAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATAATGGAGATTCTGAGTCCAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTGCGGAATTTAG 1164 43.04 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSNDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKYGWHVEVIVFYVGNKRGSIEILVDGLELDGMDVNILRMIQGVKVASKWKSKVFRHGKQRKLNPLVPFTGRKDLRELSGTSQKLQIRVDKLQPSIEMRIMEILSPTQKVFRIVTDVYDCCCGI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34546351 34553136 - Lsi02G028370.1 Lsi02g02837 657579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02837 387 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lsi02g02837 387 Gene3D - 221 327 IPR013088 GO:0006355|GO:0008270
Lsi02g02837 387 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Lsi02g02837 387 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Lsi02g02837 387 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 265 - -
Lsi02g02837 387 Pfam CCT motif 155 197 IPR010402 GO:0005515
Lsi02g02837 387 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Lsi02g02837 387 CDD ZnF_GATA 231 267 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 Pfam tify domain 84 112 IPR010399 -
Lsi02g02837 387 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Lsi02g02837 387 SMART tify_2 78 113 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02837 - - - csv:101215755 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01145 Lsi-Chr2:13506790 Lsi02g02837 Lsi-Chr2:34546351 9.15E-56 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi03g00696 Lsi-Chr3:9136922 4.85E-65 dispersed
Lsi02g02837 Lsi-Chr2:34546351 Lsi05g01573 Lsi-Chr5:23500178 6.61E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi08g01017 . 48 296 Tify Gene Family AT4G24470 52.7 6.1e-69 258.1
Lsi03g00696 . 116 286 Tify Gene Family AT4G24470 57.8 4.0e-44 175.6
Lsi02g02837 . 1 265 Tify Gene Family AT1G51600 59.7 3.3e-80 295.4
Lsi08g01017 . 41 250 Tify Gene Family AT1G51600 53.1 3.3e-48 189.1
Lsi03g00696 . 113 286 Tify Gene Family AT1G51600 59.9 1.3e-47 187.2
Lsi08g01015 . 52 199 Tify Gene Family AT1G51600 56.8 2.4e-38 156.4
Lsi02g02837 . 1 230 Tify Gene Family AT3G21175 56.1 1.5e-58 223.0
Lsi09g01294 . 1 174 Tify Gene Family AT4G14713 52.1 1.2e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24930 PF06203 CCT 1.20E-14 CL0281 Lsi TF