Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02841 ATGACGTCTCGTGGTTCCTCCGCTTCCGCCAATGGCCTATTACCGCTTAACGTTTCCACGTCCGGCCGGCATCACGATGTCGAGTCTGGGCTCTCCTCCAGCAAAAGCATTGACGAGGAGGAAGAAGAGGCCGTATCGGATCCCTTCGACATCGACAATACCAAAAATGTCCCTCTTGAGATACTCAAGCGCTGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGACGGATGATTAGAGCCCATGCACAAGTCATAAGGGCGGCACTACTTTTCAAATTGGCAGGGGAACAACAAACTGGTTCATCAGTATCACCTCCAATGTCAAGTGGTGACTATTCCATTAGTTTAGAACAGCTTGCTTCATTGACTCGTGATCAAAACTTGTCTTCTCTACAACAGTATGGAGGAGTTAAAGGCTTATCACATTTATTGAGAACAAGTACCGAGAAAGGAATATCGGGAGATGAAACTGATTTACTCAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGCTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTGGCTTTGGGGATTAAAACAGAGGGTTTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTATTGCTTGTCATAATAGTCACAGGTATTCTATCTGATTTCATTCAAAGTGCAACGGTTAGTGATTATCGACAGTCGCTTCAGTTTCAGAACTTAAACGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGTGAAAGCAAGATTGTTCGCAAGGATCAGAAGACACCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGCACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGCTTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGGTTGAATGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCAGTTGCAGTTTCTGTGCTAGCCGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGGAACACTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATCGTTACCGTTGCTGTTACTATTGTGGTTGTTGCAGTACCCGAAGGACTTCCTTTGGCTGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGGTTCGTAGGCTGTCTGCTTGTGAAACTATGGGCTCTGCAACAACAATATGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGAAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTGCATTCATTGGTACTGACTCTGCTACATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGTGGAGGCATGGAGGTCTCTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTAAAGCTGGGAATGAAGTTTGATGTTGTCAAATCAGAGTCCACAGTTCTCCATGTCGTCCCTTTCAATTCAGAAAAGAAACGAGGTGGTGTTGCAATAAAGAGGGTAATTATTATGATCTTGAATTTGGAGCATCGTGTTCTTCCTTCACCGCTTTATGGTGTTGAGGCTAACTCAGAAGTTTGCATACACTGGAAAGGAGCGGCAGAGATGGTGTTATCTTCATGTACAAAGTATGTGGACTTGAATGGTGAAGTGCACTCAATAGAGAACAATGAGGATTATTTTAAGGCAGCAATTAGTGACATGGCTGCAAGAAGTTTGCGTTGTGTTGCCATTGCATATAGATCATATGAATTGGAGAAGATTCCAATAGATGAACAACGTTTAGATCAATGGGATTTGCCTGCTGATGATCTTGTTTTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGCGATGGTGTTAAAGAGGCTGTTAAAGTGTGCACAGTTGCAGGTGTCAAGGTGCGCATGGTAACTGGAGACAATATACAGACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCCACTGAAGATGCTTCTGAGCCTACAGTAATTGAAGGAAAAACATTTCGTGTATTGTCTGAGAAGGAAAGAGAACAACTTGCCCCAAAAATAACGGTGATGGGGAGGTCTTCGCCTAATGACAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGGGAAGTTGTTGCTGTAACTGGAGATGGGACTAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGTACTGAAGTTGCTAAAGAGAGTTCTGATATTGTTATCTTGGACGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATCAATGTTGTTGCAGCTGTGTCTTCCGGTGACGTTCCTTTAAATACCGTGCAGCTTCTTTGGGTTAACCTGATCATGGATACACTTGGTGCTCTGGCACTAGCCACTGAACCACCAACAGACCACCTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACGAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTCGCTGTACTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATAATGATAGCAAGGAGCATGCCTTTAATGTGAAGAATACAGTGGTTTTCAATGCATTTGTCCTCTGTCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACGTTCGTGCTTCAGATTCTCATCGTCGAATTTGCTGGAAAATTTACTTCAACAGTAAAACTTGATGGGAAACAATGGCTTATATGCTTCGCTGTCGCCCTTGTGAGCTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCTGAGACCCCATTGGCTAAATACTTCACAAAGCAAGTTCAACGGTGCAGAAGGTCACGTGGTGCTTAA 3363 43.15 MTSRGSSASANGLLPLNVSTSGRHHDVESGLSSSKSIDEEEEEAVSDPFDIDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGSSVSPPMSSGDYSISLEQLASLTRDQNLSSLQQYGGVKGLSHLLRTSTEKGISGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGIKTEGLEEGWYDGGSIAFAVLLVIIVTGILSDFIQSATVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLGRYFTGNTHDANGNTEFQRGHTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSLVLTLLHEGIAQNSTGNVFVAKDGGGMEVSGSPTEKAILSWAVKLGMKFDVVKSESTVLHVVPFNSEKKRGGVAIKRVIIMILNLEHRVLPSPLYGVEANSEVCIHWKGAAEMVLSSCTKYVDLNGEVHSIENNEDYFKAAISDMAARSLRCVAIAYRSYELEKIPIDEQRLDQWDLPADDLVLLAIVGIKDPCRDGVKEAVKVCTVAGVKVRMVTGDNIQTAKAIAVECGILNATEDASEPTVIEGKTFRVLSEKEREQLAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNNDSKEHAFNVKNTVVFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQILIVEFAGKFTSTVKLDGKQWLICFAVALVSWPLAVVGKLIPVPETPLAKYFTKQVQRCRRSRGA 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34592620 34613830 + Lsi02G028410.1 Lsi02g02841 657583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02841 1120 Gene3D - 59 112 - -
Lsi02g02841 1120 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516
Lsi02g02841 1120 SFLD p-type atpase 488 886 IPR044492 -
Lsi02g02841 1120 SUPERFAMILY HAD-like 504 939 IPR036412 -
Lsi02g02841 1120 MobiDBLite consensus disorder prediction 1 27 - -
Lsi02g02841 1120 ProSitePatterns E1-E2 ATPases phosphorylation site. 508 514 IPR018303 -
Lsi02g02841 1120 Pfam Cation transporting ATPase, C-terminus 919 1096 IPR006068 -
Lsi02g02841 1120 PANTHER CATION TRANSPORTING ATPASE 32 1112 - -
Lsi02g02841 1120 Gene3D - 204 1089 - -
Lsi02g02841 1120 Gene3D - 177 382 - -
Lsi02g02841 1120 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 446 529 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02841 1120 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 803 914 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g02841 1120 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 641 1098 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi02g02841 1120 CDD P-type_ATPase_Ca_PMCA-like 178 967 - -
Lsi02g02841 1120 SFLD Haloacid Dehalogenase 488 886 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 727 738 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 749 759 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 858 870 - -
Lsi02g02841 1120 PRINTS P-type cation-transporting ATPase superfamily signature 506 520 - -
Lsi02g02841 1120 PANTHER CALCIUM-TRANSPORTING ATPASE 32 1112 - -
Lsi02g02841 1120 Pfam haloacid dehalogenase-like hydrolase 503 848 - -
Lsi02g02841 1120 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Lsi02g02841 1120 Gene3D - 503 879 IPR023214 -
Lsi02g02841 1120 Gene3D - 516 734 IPR023299 GO:0000166
Lsi02g02841 1120 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Lsi02g02841 1120 SUPERFAMILY Calcium ATPase, transduction domain A 283 379 IPR008250 -
Lsi02g02841 1120 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 513 731 IPR023299 GO:0000166
Lsi02g02841 1120 MobiDBLite consensus disorder prediction 1 49 - -
Lsi02g02841 1120 Pfam E1-E2 ATPase 282 484 - -
Lsi02g02841 1120 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1098 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02253 Lsi-Chr2:29003705 Lsi02g02841 Lsi-Chr2:34592620 0 dispersed
Lsi02g02841 Lsi-Chr2:34592620 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi02g02841 Lsi-Chr2:34592620 Lsi01g00892 Lsi-Chr1:7182041 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02841 K01537 - csv:101214801 1909.81