Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g02841 | ATGACGTCTCGTGGTTCCTCCGCTTCCGCCAATGGCCTATTACCGCTTAACGTTTCCACGTCCGGCCGGCATCACGATGTCGAGTCTGGGCTCTCCTCCAGCAAAAGCATTGACGAGGAGGAAGAAGAGGCCGTATCGGATCCCTTCGACATCGACAATACCAAAAATGTCCCTCTTGAGATACTCAAGCGCTGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGACGGATGATTAGAGCCCATGCACAAGTCATAAGGGCGGCACTACTTTTCAAATTGGCAGGGGAACAACAAACTGGTTCATCAGTATCACCTCCAATGTCAAGTGGTGACTATTCCATTAGTTTAGAACAGCTTGCTTCATTGACTCGTGATCAAAACTTGTCTTCTCTACAACAGTATGGAGGAGTTAAAGGCTTATCACATTTATTGAGAACAAGTACCGAGAAAGGAATATCGGGAGATGAAACTGATTTACTCAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGCTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTGGCTTTGGGGATTAAAACAGAGGGTTTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTATTGCTTGTCATAATAGTCACAGGTATTCTATCTGATTTCATTCAAAGTGCAACGGTTAGTGATTATCGACAGTCGCTTCAGTTTCAGAACTTAAACGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGTGAAAGCAAGATTGTTCGCAAGGATCAGAAGACACCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGCACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGCTTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGGTTGAATGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCAGTTGCAGTTTCTGTGCTAGCCGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGGAACACTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATCGTTACCGTTGCTGTTACTATTGTGGTTGTTGCAGTACCCGAAGGACTTCCTTTGGCTGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGGTTCGTAGGCTGTCTGCTTGTGAAACTATGGGCTCTGCAACAACAATATGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGAAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTGCATTCATTGGTACTGACTCTGCTACATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGTGGAGGCATGGAGGTCTCTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTAAAGCTGGGAATGAAGTTTGATGTTGTCAAATCAGAGTCCACAGTTCTCCATGTCGTCCCTTTCAATTCAGAAAAGAAACGAGGTGGTGTTGCAATAAAGAGGGTAATTATTATGATCTTGAATTTGGAGCATCGTGTTCTTCCTTCACCGCTTTATGGTGTTGAGGCTAACTCAGAAGTTTGCATACACTGGAAAGGAGCGGCAGAGATGGTGTTATCTTCATGTACAAAGTATGTGGACTTGAATGGTGAAGTGCACTCAATAGAGAACAATGAGGATTATTTTAAGGCAGCAATTAGTGACATGGCTGCAAGAAGTTTGCGTTGTGTTGCCATTGCATATAGATCATATGAATTGGAGAAGATTCCAATAGATGAACAACGTTTAGATCAATGGGATTTGCCTGCTGATGATCTTGTTTTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGCGATGGTGTTAAAGAGGCTGTTAAAGTGTGCACAGTTGCAGGTGTCAAGGTGCGCATGGTAACTGGAGACAATATACAGACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCCACTGAAGATGCTTCTGAGCCTACAGTAATTGAAGGAAAAACATTTCGTGTATTGTCTGAGAAGGAAAGAGAACAACTTGCCCCAAAAATAACGGTGATGGGGAGGTCTTCGCCTAATGACAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGGGAAGTTGTTGCTGTAACTGGAGATGGGACTAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGTACTGAAGTTGCTAAAGAGAGTTCTGATATTGTTATCTTGGACGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATCAATGTTGTTGCAGCTGTGTCTTCCGGTGACGTTCCTTTAAATACCGTGCAGCTTCTTTGGGTTAACCTGATCATGGATACACTTGGTGCTCTGGCACTAGCCACTGAACCACCAACAGACCACCTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACGAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTCGCTGTACTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATAATGATAGCAAGGAGCATGCCTTTAATGTGAAGAATACAGTGGTTTTCAATGCATTTGTCCTCTGTCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACGTTCGTGCTTCAGATTCTCATCGTCGAATTTGCTGGAAAATTTACTTCAACAGTAAAACTTGATGGGAAACAATGGCTTATATGCTTCGCTGTCGCCCTTGTGAGCTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCTGAGACCCCATTGGCTAAATACTTCACAAAGCAAGTTCAACGGTGCAGAAGGTCACGTGGTGCTTAA | 3363 | 43.15 | MTSRGSSASANGLLPLNVSTSGRHHDVESGLSSSKSIDEEEEEAVSDPFDIDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGSSVSPPMSSGDYSISLEQLASLTRDQNLSSLQQYGGVKGLSHLLRTSTEKGISGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGIKTEGLEEGWYDGGSIAFAVLLVIIVTGILSDFIQSATVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLGRYFTGNTHDANGNTEFQRGHTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSLVLTLLHEGIAQNSTGNVFVAKDGGGMEVSGSPTEKAILSWAVKLGMKFDVVKSESTVLHVVPFNSEKKRGGVAIKRVIIMILNLEHRVLPSPLYGVEANSEVCIHWKGAAEMVLSSCTKYVDLNGEVHSIENNEDYFKAAISDMAARSLRCVAIAYRSYELEKIPIDEQRLDQWDLPADDLVLLAIVGIKDPCRDGVKEAVKVCTVAGVKVRMVTGDNIQTAKAIAVECGILNATEDASEPTVIEGKTFRVLSEKEREQLAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNNDSKEHAFNVKNTVVFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQILIVEFAGKFTSTVKLDGKQWLICFAVALVSWPLAVVGKLIPVPETPLAKYFTKQVQRCRRSRGA | 1120 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34592620 | 34613830 | + | Lsi02G028410.1 | Lsi02g02841 | 657583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g02841 | 1120 | Gene3D | - | 59 | 112 | - | - | |
Lsi02g02841 | 1120 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 47 | 89 | IPR024750 | GO:0005516 | |
Lsi02g02841 | 1120 | SFLD | p-type atpase | 488 | 886 | IPR044492 | - | |
Lsi02g02841 | 1120 | SUPERFAMILY | HAD-like | 504 | 939 | IPR036412 | - | |
Lsi02g02841 | 1120 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lsi02g02841 | 1120 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 508 | 514 | IPR018303 | - | |
Lsi02g02841 | 1120 | Pfam | Cation transporting ATPase, C-terminus | 919 | 1096 | IPR006068 | - | |
Lsi02g02841 | 1120 | PANTHER | CATION TRANSPORTING ATPASE | 32 | 1112 | - | - | |
Lsi02g02841 | 1120 | Gene3D | - | 204 | 1089 | - | - | |
Lsi02g02841 | 1120 | Gene3D | - | 177 | 382 | - | - | |
Lsi02g02841 | 1120 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 446 | 529 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02841 | 1120 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 803 | 914 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g02841 | 1120 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 641 | 1098 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi02g02841 | 1120 | CDD | P-type_ATPase_Ca_PMCA-like | 178 | 967 | - | - | |
Lsi02g02841 | 1120 | SFLD | Haloacid Dehalogenase | 488 | 886 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 727 | 738 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 834 | 853 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 330 | 344 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 749 | 759 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 858 | 870 | - | - | |
Lsi02g02841 | 1120 | PRINTS | P-type cation-transporting ATPase superfamily signature | 506 | 520 | - | - | |
Lsi02g02841 | 1120 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 32 | 1112 | - | - | |
Lsi02g02841 | 1120 | Pfam | haloacid dehalogenase-like hydrolase | 503 | 848 | - | - | |
Lsi02g02841 | 1120 | Pfam | Cation transporter/ATPase, N-terminus | 154 | 221 | IPR004014 | - | |
Lsi02g02841 | 1120 | Gene3D | - | 503 | 879 | IPR023214 | - | |
Lsi02g02841 | 1120 | Gene3D | - | 516 | 734 | IPR023299 | GO:0000166 | |
Lsi02g02841 | 1120 | SMART | Cation_ATPase_N_a_2 | 152 | 226 | IPR004014 | - | |
Lsi02g02841 | 1120 | SUPERFAMILY | Calcium ATPase, transduction domain A | 283 | 379 | IPR008250 | - | |
Lsi02g02841 | 1120 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 513 | 731 | IPR023299 | GO:0000166 | |
Lsi02g02841 | 1120 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Lsi02g02841 | 1120 | Pfam | E1-E2 ATPase | 282 | 484 | - | - | |
Lsi02g02841 | 1120 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 153 | 1098 | IPR023298 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02253 | Lsi-Chr2:29003705 | Lsi02g02841 | Lsi-Chr2:34592620 | 0 | dispersed | |
Lsi02g02841 | Lsi-Chr2:34592620 | Lsi11g00805 | Lsi-Chr11:9824443 | 0 | dispersed | |
Lsi02g02841 | Lsi-Chr2:34592620 | Lsi01g00892 | Lsi-Chr1:7182041 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g02841 | K01537 | - | csv:101214801 | 1909.81 |