Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02843 ATGGATGAGATGGAAGCCACTGGGAAGCTTGTTGCAGCTAGACAGCTCTTGAAAACTGGCCTTGAAAGGTCAAGAGACGTTGCATTTAAACTGGCCATTGCTGGACCAAGATTGAGAGACAAGGCTCAAAGGCTTGCAAATTTGGAAGCCAAGCTCGTTCAGATTCAGAAATGCAACTCTTTTGCTGTTGGAGATCAGATAGATCATGCCATTGGACTTGCGGCTGCGCTTCTTAATGTTTTCGATACTGTTTCTGAACTTCAGAAGTCACTCATGGCCGATTCTTGTTCTCAACTCTCCAGTTACCTCTCTGTCATGAAACGGTTTGAAGAAGCACTTGAATTTCTTTCTGATAATTGCAGCCTTACAATTCAGTGGTTGGATGGAATTGTTCGATTTGTTGAAGACAACAGAATAGTAAATGATCAACGACTTCTCAATGTCAAAAACTCATTGGCAACTCTTTGCGAGTTGCAGACAGCTGAGAACAGTGCTCGTATCGACGAAGGGCCTCTCGATTTTGCACTGAACAAGCTTGAATTTGAGTTCAGGAGGTTATTGAGAGACCATAGCGTTTCTCTTCATCTGGCTCCACCCTTATTGACCAATGAAAACCAAGGCTTCATTGGTTTCTCACCATTGCCAGAATCTGTAGTTCAAGAACTACAGTTAATTCTTACTAGACTGAAAGCCAATGATCGAATTGAAAACTGCATATCGATATACATCGAAGTTCGAAGTTCAAATGCTGAACTAAGTTTAAGAACTCTTGGTTTGGATTATCTTGAGACGTCAGTGGATGACTTGAGCAACATGCAGAGCATTGAAGATCATATAAACAGATGGAGCAAGCATCTTGAGCTTGCTGTGAAGCATTTATATGAGCCTGAATGTAAGCTCTGCAATGACATATTTGAGAAGATGGAATCCGAAGTTGGGACCAGATGTTTCGCTAAGATTGCATCACAATCTGGATTTACCTCTCTCCTCCAATTTGGGAGGAAAGTCGCCCAAACAAAGAAGGATCCCATCAAGCTTTTAAACCTACTAGACATTTTCTTGGTTCTAGACAACCTAAGGACAGACATTAACAAGCTGTTTGGTGGGAAAGCTTGCACAGATATTCAAGCCACAACAAGGGATCTCGTAAAACAAGTCGTAAACGGCATATGCGAGGTTTTCTCGGAACTTCCAATCCAAGTTGAGTTGCAAAGACAGAGTTATCCTCCAGATGATGGTGATATTCCAAGCTTGGTAAGCTTTGTCACTGATTACTGCAACAAACTACTTGGGAACCATTACAAACCAATCCTAAACCAGATTTTAATCATCCATCAAAGCTGGGAGCAAGAGACATGTCAAGAGAACCTTCTAGAGAACCAGATTTATCTAATCATAAAAGAACTTGCCTTAAATCTAGATACATGGGCAAAAGTCTACCAAGATATGTCCAAGTCCTACTACTTCATGATGAACAACCACTGCCATTTCAGCAGTCTAAAAGGATCAAAACTAGGCGAAATGATGGGAAATGAATGGTTAAGCGCTCACAACCAATACAAGGAATATTACGCAGCGCTTTACCTGAGAGAAAGCTGGGGAGAGCTTCTCAGCCTTCTAAATCAAAAGGGTGAGCTTCCATTTGAAGGCGAGAAATGGGATGATAACGATCTGTTGAAGAAGAGGGTAAAAAAATTCTCTCAGGCATTTGAACAAACATGTAAAAGGCAATCGAAATGGGTAATTTCAGATGAGGGTTTGAGAGAGAGAATTTGCCTGCTATTAGTGCAGGCGATTGTGCCAGTTTATTTAAAGAATTTCGAGGCTTTGATCGAACAAGATCGAGGCGCAGCTAAGTATTTGAAATATACTGCAGAAAGTATGGGGAATATGATCAGCTCCCTGTTTCGCCCAATGTTGACCGTGCAAAGAAGCAGTGGTCAGACACATACCCGCTTCATTACCAAAATTAAGAGCCTTGTTACTAATCAATTTCGCGCGTCTGTCGCTGCTCTATGA 2019 41.56 MDEMEATGKLVAARQLLKTGLERSRDVAFKLAIAGPRLRDKAQRLANLEAKLVQIQKCNSFAVGDQIDHAIGLAAALLNVFDTVSELQKSLMADSCSQLSSYLSVMKRFEEALEFLSDNCSLTIQWLDGIVRFVEDNRIVNDQRLLNVKNSLATLCELQTAENSARIDEGPLDFALNKLEFEFRRLLRDHSVSLHLAPPLLTNENQGFIGFSPLPESVVQELQLILTRLKANDRIENCISIYIEVRSSNAELSLRTLGLDYLETSVDDLSNMQSIEDHINRWSKHLELAVKHLYEPECKLCNDIFEKMESEVGTRCFAKIASQSGFTSLLQFGRKVAQTKKDPIKLLNLLDIFLVLDNLRTDINKLFGGKACTDIQATTRDLVKQVVNGICEVFSELPIQVELQRQSYPPDDGDIPSLVSFVTDYCNKLLGNHYKPILNQILIIHQSWEQETCQENLLENQIYLIIKELALNLDTWAKVYQDMSKSYYFMMNNHCHFSSLKGSKLGEMMGNEWLSAHNQYKEYYAALYLRESWGELLSLLNQKGELPFEGEKWDDNDLLKKRVKKFSQAFEQTCKRQSKWVISDEGLRERICLLLVQAIVPVYLKNFEALIEQDRGAAKYLKYTAESMGNMISSLFRPMLTVQRSSGQTHTRFITKIKSLVTNQFRASVAAL 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34624375 34626393 + Lsi02G028430.1 Lsi02g02843 657585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02843 672 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 638 IPR004140 GO:0000145|GO:0006887
Lsi02g02843 672 Coils Coil 38 58 - -
Lsi02g02843 672 Pfam Exo70 exocyst complex subunit 281 633 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi02g02843 672 Gene3D Exocyst complex component Exo70 135 641 - -
Lsi02g02843 672 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 9 638 - -
Lsi02g02843 672 SUPERFAMILY Cullin repeat-like 77 636 IPR016159 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02843 Lsi07g00662 CCT
Lsi02g02843 Lsi07g00662 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02843 Lsi-Chr2:34624375 Lsi08g01120 Lsi-Chr8:19849929 0 dispersed
Lsi02g02843 Lsi-Chr2:34624375 Lsi04g00846 Lsi-Chr4:8234422 3.68E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02843 K07195 - csv:101214965 1174.46