Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02850 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCGCTGCCTTAAAGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGACCCTTGTGGGCAATCATGGAAGGGGATTACTTGCTCCAACTCACGGGTTACAGAAATAAACTTATCTGGCCTTCAACTCAATGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAATAACAATATTGCAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCGTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGAACCATTGAATGATGTGTATGGACAGCTAACTTCCCTATCCACATTGGATCTGTCCTTCAATGCTATGCCGGGCAACCTGCCTCAGAGTTTTAGCTCTCTTACTGGCATCAGCAGTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAATCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAATCACTGAAGAGCATCAATCTGCAGACAAGTGGAAACTCCTGGAACACCAGTCCTGCACCTCCGCCTCCACCTGGTACACCACCATACACCAGAAGAAACCGAAATCCCAATTCTGGTGGCAGTTCATCAAATGGTGGTTCTCGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTACTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGATCCAAGAGATCATCTACGGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAATGACTGCAGCACAAGGATATGAGAGAGAGACAGTCAAGGAAGAACATTTGAGTTTTCAGTTTATGGTTGAGTTTCCCGTCTCTATAGCTATTCAGCCTGAAACAAAGTCGGAAGAGACTTCCTCCACATTTTATCCAACATCTTTTGACACTGCTGCTGCAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAAGATGACTTCTCAAATCGAGCTGTTGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTATTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCAAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTTGTGGGGTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTATTACACCTATCAGATGAATTCAACAAACCCCTGATATGGAATTCACGCATTAAGATTGCTTTGGGAACAGCGCGTGCATTAGAGTATCTTCATGAAGTGTGCTCCCCATCAATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCCTTGTACCAAATGCAGATCAGGCATTGGATGGCAGTGCAAGTTCAGGATACGCTGCCCCGGAGGTTACCATGTCCGGTCAATATACTCTGCAAAGCGATGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTTGATAGTTACTTGACTTGCCATTTCTGGTTTATTTCAAAGGAAACACAACATTTAGTCCGTTTGACATATTGTTCTCGTGATTTAAGTTCAAGGGCGAGGATGGAACAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCATTGGTCCGTTTGGTGCAGCGAGCGAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACACCATAA 2307 43.95 MNWRWRELISLIILCILGWKPSCIQGTTDPTDAAALKVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSNSRVTEINLSGLQLNGSLGYQLGSMTSVTNLDVSNNNIAGEIVYNLPPNLKRLNLARNNFNKGIPYSISLMTSLQYLNISHNQLQEPLNDVYGQLTSLSTLDLSFNAMPGNLPQSFSSLTGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPESLKSINLQTSGNSWNTSPAPPPPPGTPPYTRRNRNPNSGGSSSNGGSREGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSTDIEKLDNQPLQPLKMTAAQGYERETVKEEHLSFQFMVEFPVSIAIQPETKSEETSSTFYPTSFDTAAAINLKPPPIDRHKSFDEDDFSNRAVVKKASAAAPINVKSYSIADLQIATGSFNVENLIGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEFNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESLVPNADQALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSYLTCHFWFISKETQHLVRLTYCSRDLSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34678825 34684787 + Lsi02G028500.1 Lsi02g02850 657592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02850 768 ProSitePatterns Protein kinases ATP-binding region signature. 443 466 IPR017441 GO:0005524
Lsi02g02850 768 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lsi02g02850 768 PANTHER OS01G0253100 PROTEIN 19 642 IPR045271 GO:0004714|GO:0006468
Lsi02g02850 768 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Lsi02g02850 768 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 642 - -
Lsi02g02850 768 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 668 761 - -
Lsi02g02850 768 SUPERFAMILY Protein kinase-like (PK-like) 420 736 IPR011009 -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 748 768 - -
Lsi02g02850 768 ProSiteProfiles Protein kinase domain profile. 437 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02850 768 PANTHER OS01G0253100 PROTEIN 668 761 IPR045271 GO:0004714|GO:0006468
Lsi02g02850 768 CDD STKc_IRAK 443 739 - -
Lsi02g02850 768 Gene3D Phosphorylase Kinase; domain 1 401 514 - -
Lsi02g02850 768 Gene3D Transferase(Phosphotransferase) domain 1 516 758 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 246 260 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 261 281 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 238 283 - -
Lsi02g02850 768 Pfam Protein tyrosine and serine/threonine kinase 439 735 IPR001245 GO:0004672|GO:0006468
Lsi02g02850 768 SUPERFAMILY L domain-like 29 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00341 Lsi-Chr1:2992647 Lsi02g02850 Lsi-Chr2:34678825 2.13E-162 dispersed
Lsi02g02850 Lsi-Chr2:34678825 Lsi03g01722 Lsi-Chr3:28585611 5.21E-164 dispersed
Lsi02g01068 Lsi-Chr2:11694089 Lsi02g02850 Lsi-Chr2:34678825 0 transposed
Lsi08g00380 Lsi-Chr8:10465480 Lsi02g02850 Lsi-Chr2:34678825 5.92E-148 transposed
Lsi02g02850 Lsi-Chr2:34678825 Lsi07g00634 Lsi-Chr7:6790676 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83446 PF07714 PK_Tyr_Ser-Thr 3.70E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02850 - - csv:101213107 1186.79