Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02850 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCGCTGCCTTAAAGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGACCCTTGTGGGCAATCATGGAAGGGGATTACTTGCTCCAACTCACGGGTTACAGAAATAAACTTATCTGGCCTTCAACTCAATGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAATAACAATATTGCAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCGTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGAACCATTGAATGATGTGTATGGACAGCTAACTTCCCTATCCACATTGGATCTGTCCTTCAATGCTATGCCGGGCAACCTGCCTCAGAGTTTTAGCTCTCTTACTGGCATCAGCAGTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAATCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAATCACTGAAGAGCATCAATCTGCAGACAAGTGGAAACTCCTGGAACACCAGTCCTGCACCTCCGCCTCCACCTGGTACACCACCATACACCAGAAGAAACCGAAATCCCAATTCTGGTGGCAGTTCATCAAATGGTGGTTCTCGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTACTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGGAGATCCAAGAGATCATCTACGGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAATGACTGCAGCACAAGGATATGAGAGAGAGACAGTCAAGGAAGAACATTTGAGTTTTCAGTTTATGGTTGAGTTTCCCGTCTCTATAGCTATTCAGCCTGAAACAAAGTCGGAAGAGACTTCCTCCACATTTTATCCAACATCTTTTGACACTGCTGCTGCAATTAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGAAGATGACTTCTCAAATCGAGCTGTTGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTATTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCAAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTTGTGGGGTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTATTACACCTATCAGATGAATTCAACAAACCCCTGATATGGAATTCACGCATTAAGATTGCTTTGGGAACAGCGCGTGCATTAGAGTATCTTCATGAAGTGTGCTCCCCATCAATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGCTGGATGCCGAACTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCCTTGTACCAAATGCAGATCAGGCATTGGATGGCAGTGCAAGTTCAGGATACGCTGCCCCGGAGGTTACCATGTCCGGTCAATATACTCTGCAAAGCGATGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTTGATAGTTACTTGACTTGCCATTTCTGGTTTATTTCAAAGGAAACACAACATTTAGTCCGTTTGACATATTGTTCTCGTGATTTAAGTTCAAGGGCGAGGATGGAACAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTATCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCATTGGTCCGTTTGGTGCAGCGAGCGAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACACCATAA 2307 43.95 MNWRWRELISLIILCILGWKPSCIQGTTDPTDAAALKVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSNSRVTEINLSGLQLNGSLGYQLGSMTSVTNLDVSNNNIAGEIVYNLPPNLKRLNLARNNFNKGIPYSISLMTSLQYLNISHNQLQEPLNDVYGQLTSLSTLDLSFNAMPGNLPQSFSSLTGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPESLKSINLQTSGNSWNTSPAPPPPPGTPPYTRRNRNPNSGGSSSNGGSREGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSTDIEKLDNQPLQPLKMTAAQGYERETVKEEHLSFQFMVEFPVSIAIQPETKSEETSSTFYPTSFDTAAAINLKPPPIDRHKSFDEDDFSNRAVVKKASAAAPINVKSYSIADLQIATGSFNVENLIGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEFNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESLVPNADQALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSYLTCHFWFISKETQHLVRLTYCSRDLSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34678825 34684787 + Lsi02G028500.1 Lsi02g02850 657592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02850 768 ProSitePatterns Protein kinases ATP-binding region signature. 443 466 IPR017441 GO:0005524
Lsi02g02850 768 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lsi02g02850 768 PANTHER OS01G0253100 PROTEIN 19 642 IPR045271 GO:0004714|GO:0006468
Lsi02g02850 768 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Lsi02g02850 768 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 642 - -
Lsi02g02850 768 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 668 761 - -
Lsi02g02850 768 SUPERFAMILY Protein kinase-like (PK-like) 420 736 IPR011009 -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 748 768 - -
Lsi02g02850 768 ProSiteProfiles Protein kinase domain profile. 437 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g02850 768 PANTHER OS01G0253100 PROTEIN 668 761 IPR045271 GO:0004714|GO:0006468
Lsi02g02850 768 CDD STKc_IRAK 443 739 - -
Lsi02g02850 768 Gene3D Phosphorylase Kinase; domain 1 401 514 - -
Lsi02g02850 768 Gene3D Transferase(Phosphotransferase) domain 1 516 758 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 246 260 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 261 281 - -
Lsi02g02850 768 MobiDBLite consensus disorder prediction 238 283 - -
Lsi02g02850 768 Pfam Protein tyrosine and serine/threonine kinase 439 735 IPR001245 GO:0004672|GO:0006468
Lsi02g02850 768 SUPERFAMILY L domain-like 29 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02850 - - - csv:101213107 1186.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00341 Lsi-Chr1:2992647 Lsi02g02850 Lsi-Chr2:34678825 2.13E-162 dispersed
Lsi02g02850 Lsi-Chr2:34678825 Lsi03g01722 Lsi-Chr3:28585611 5.21E-164 dispersed
Lsi02g01068 Lsi-Chr2:11694089 Lsi02g02850 Lsi-Chr2:34678825 0 transposed
Lsi08g00380 Lsi-Chr8:10465480 Lsi02g02850 Lsi-Chr2:34678825 5.92E-148 transposed
Lsi02g02850 Lsi-Chr2:34678825 Lsi07g00634 Lsi-Chr7:6790676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83446 PF07714 PK_Tyr_Ser-Thr 3.70E-40 CL0016 Lsi PK