Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02855 ATGGAAGAGACCAATATCATGGAAAAACCCATCGCCGCCGGAATCTCAAATTCCGGCAACCACCCTCAAAAGCCCAAAAACAAGTCAAAAAAGCTTCTAATTTTAGCCCTCTCTTCCACCCTCCTCCTCGTCGGCGCCGTCGTGGGGATCGTCGCCGGAGTGACGAAATCGAAAAACTCCGGCAAAGGCCACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTTTACCCGGATCTGTGCTTTTCTACAATTTCGAAAAGTGAAGGGGCAATGTTGAAAGTGAGTAATCAAAAGGATGTGATTGAGCTGTCAATTAATATAACGGTGAAAGCCGTGGAAGAAAATTACTTTAAAGTGAAGAAATTGTGTGGATTGAAAAATATTAGCCATAGAGAGAAAATTGCTCTTCATGATTGTCTTGAGACAATTGATGAAACGCTTGATGAACTTCATAAAGCCATTGTAGACCTTCATGAATACCCAAATAAAAAATCTCTTAATCAACATGCTGATGATCTCAAGACCTTGCTTAGTTCCGCCATTACCAATCAGGAGACCTGTCTCGACGGATTTTCGCATGATGGAGCGGACAAAAACCTACGGGATAAGCTAAAAGAGGGGCAAGTGGAAGTGGAACACATGTGCAGCAATGCATTAGCCATGATTAAGAACATGACGGATACAGACATAGCCAATTACGAGGCTAAAATGGGAACAACCAATAATAGAAAGCTCAAGGAAGAACAGAACAACGGCGACGGTATCCAGTGGCCGGAGTGGCTGTCGGCCGGAAACCGGCGGATGCTGCAGTCGTCGTCCGTGACCCCGGATGTGGTGGTGGCGGCGGACGGCAGCGGAAATTTCCGGACGGTGGCGGCCGCCGTGGCGGCGGCGCCGGTGAAAAGTAGCAAAAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTGGAAGTGCCGAAGAAGAAAACGAATATAATGTTCATGGGAGATGGAAGAAGTAATACTATAATTACTGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGAGAAGGATTTCTAGCGCGTGACATCACGTTCCAAAACACCGCCGGTCCCTCAAAACATCAAGCGGTGGCGCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAATCGACAGTTCTACATTAACTGTCTCGTCTCTGGCACCGTTGATTTCATTTTCGGCAACGCCGCCGCCATTTTCCAAGACTGTGACATTCACGCGCGCAAACCAAACTCCGGTCAGAAAAACATGGTGACGGCCCAGGGCCGGTCCGACCCGAACCAAAACACTGGAATCGTTATCCAGAAATCACGCATTGGAGCCACGTCGGATCTCCGACCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCTAGAACCGTGATTATGCAGTCAACGATTAGTGACGTCATTGACCCGAAAGGATGGCATGAGTGGAGCGGTAATTTTGCTCTGAACACGTTGTTTTACGGTGAGTATGAGAATACTGGACCGGGGGCTTCAACCGGGGGGAGGGTGACGTGGAAGGGATTTAGGGTAATTCGAAGTGCCACGGAGGCTGAAGGTTTTACCGCAGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGGTCTACTGGTTTTCCTTTCTCTCTAGGATTATGA 1767 48.84 MEETNIMEKPIAAGISNSGNHPQKPKNKSKKLLILALSSTLLLVGAVVGIVAGVTKSKNSGKGHAIVKSTCSSTLYPDLCFSTISKSEGAMLKVSNQKDVIELSINITVKAVEENYFKVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDGADKNLRDKLKEGQVEVEHMCSNALAMIKNMTDTDIANYEAKMGTTNNRKLKEEQNNGDGIQWPEWLSAGNRRMLQSSSVTPDVVVAADGSGNFRTVAAAVAAAPVKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVSGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGNFALNTLFYGEYENTGPGASTGGRVTWKGFRVIRSATEAEGFTAGKFIGGGSWLRSTGFPFSLGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34762746 34767922 + Lsi02G028550.1 Lsi02g02855 657597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02855 588 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
Lsi02g02855 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 226 IPR035513 -
Lsi02g02855 588 MobiDBLite consensus disorder prediction 1 25 - -
Lsi02g02855 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 225 IPR006501 GO:0004857
Lsi02g02855 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Lsi02g02855 588 PANTHER PECTINESTERASE 28 587 - -
Lsi02g02855 588 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857
Lsi02g02855 588 CDD PMEI-like_3 69 226 - -
Lsi02g02855 588 SUPERFAMILY Pectin lyase-like 274 587 IPR011050 -
Lsi02g02855 588 SMART PMEI_2 62 221 IPR006501 GO:0004857
Lsi02g02855 588 Pfam Pectinesterase 277 573 IPR000070 GO:0030599|GO:0042545
Lsi02g02855 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 226 IPR035513 -
Lsi02g02855 588 Gene3D - 271 588 IPR012334 -
Lsi02g02855 588 PANTHER PECTINESTERASE 28 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02108 Lsi-Chr2:27269539 Lsi02g02855 Lsi-Chr2:34762746 0 dispersed
Lsi02g02855 Lsi-Chr2:34762746 Lsi05g01321 Lsi-Chr5:20974152 2.22E-38 dispersed
Lsi09g01450 Lsi-Chr9:22477690 Lsi02g02855 Lsi-Chr2:34762746 2.16E-140 dispersed
Lsi11g00122 Lsi-Chr11:1390273 Lsi02g02855 Lsi-Chr2:34762746 4.69E-142 dispersed
Lsi01g00409 Lsi-Chr1:3476766 Lsi02g02855 Lsi-Chr2:34762746 1.65E-152 transposed
Lsi02g02855 Lsi-Chr2:34762746 Lsi07g00641 Lsi-Chr7:6839640 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02855 K01051 - csv:101212388 1030.78