Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g02858 ATGTGGTGGAGATCGGCTTCTTTCATCCTCGACAAGCAGCAGGCTGAAGGCGCTTTAAAGCCCCCAGAAACCCTTTCTATCTCCCCACCCGCGCAATCTTCTATGGCGGACGCATTTCAAAACCCTAACCCTAAAATCTCAGCCTATTACCAAAGTAGGGCTGCCCACACCGCCGTCGTCACCAGTGATTGGCTCGCCCAGGCGCAGGCCGCTGTCGGATTCCAAACCGACGATCATATACTGTCGGAAACTGATGCCAGGGACTCTGAATCCGGTAAGCCGTTCAGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCTGTTGCAGCTATTCGGGCTTTGGCGGCTGTAATAAGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATTGAGCTGAAAAAGGCTTCGGACTCTCTAAAATCGTGGGATACAACTTCGATATCATTAACAGCTGGCTGTGATTTGTTCTTGCGGTATGTAACTCGAACATCGGCTTTAGAATATGAGGACTTCAAGTCTGCTAAATCTCGTCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTTAGTCAGGATTTCATTTTTGATGGCTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTGGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCAGACAGGACAGGTTTGCGTTTATCCAATGAGCTAGCTAAACTTGATGTCCCTGTGAAGCTCCTAATTGACTCAGCAGTAGCGTATACAATGGATGAGGTTGATATGGTTCTTGTTGGGGCCGATGGAGTAGTTGAGAGTGGAGGTATAATCAACATGATGGGCACGTATCAAATTGCATTAGTGGCACATAGCATGAACAAACCGGTGTATGTGGCCGCTGAGAGTTATAAGTTTGCTCGACTGTACCCATTGGATCAAAAAGACATGGCCCCTGCTCTGCGTCCAATAGATTTTGGGGTTCCAATCCCATCCAAGGTTGAAGTTGAAAAATCTGCTCGAGACTATACTCCTCCTCAATACCTTACTCTTCTCTTTACAGATTTGGGCGTTCTCTCTCCATCTGTGGTGAGTGACGAACTCATCCAACTATATTTATAG 1185 46.5 MWWRSASFILDKQQAEGALKPPETLSISPPAQSSMADAFQNPNPKISAYYQSRAAHTAVVTSDWLAQAQAAVGFQTDDHILSETDARDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFLRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34804600 34808104 + Lsi02G028580.1 Lsi02g02858 657600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g02858 394 Gene3D - 94 195 IPR042528 -
Lsi02g02858 394 SUPERFAMILY NagB/RpiA/CoA transferase-like 110 393 IPR037171 -
Lsi02g02858 394 Coils Coil 132 152 - -
Lsi02g02858 394 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 38 394 - -
Lsi02g02858 394 Gene3D - 198 394 IPR042529 -
Lsi02g02858 394 Pfam Initiation factor 2 subunit family 108 382 IPR000649 GO:0044237
Lsi02g02858 394 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 38 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02858 Lsi-Chr2:34804600 Lsi06g01357 Lsi-Chr6:24147933 6.52E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g02858 K03239 - csv:101211420 741.11